Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 0.0e+00 1285.0 648 100.0
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.5e-229 797.3 608 68.4
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.6e-227 793.1 595 68.4
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.8e-226 789.6 606 68.3
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 3.3e-225 785.4 585 69.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 4.3e-225 785.0 597 67.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-223 780.0 588 68.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.5e-222 776.5 595 67.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 4.5e-222 775.0 593 67.6
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.9e-221 772.3 595 67.1
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.8e-221 771.9 602 66.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.0e-221 771.5 603 66.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-220 770.4 604 66.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.4e-220 770.0 538 72.5
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-220 770.0 601 66.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.9e-220 769.6 597 66.8
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.9e-220 769.6 513 74.5
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 2.5e-220 769.2 595 67.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.2e-220 767.7 597 66.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 9.4e-220 767.3 595 67.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.2e-219 766.9 580 68.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.1e-219 766.1 597 66.0
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.6e-219 765.4 602 66.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 6.1e-219 764.6 584 67.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.4e-218 763.5 595 66.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.4e-218 763.5 597 65.8
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.8e-218 763.1 538 71.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.8e-218 763.1 599 65.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.9e-218 761.9 590 66.9
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 6.7e-218 761.1 618 65.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.1e-217 760.4 549 69.4
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.1e-217 760.4 595 66.6
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.1e-217 760.4 541 71.7
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.5e-217 760.0 558 68.6
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.3e-217 758.8 599 64.9
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 4.4e-217 758.4 537 70.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.7e-216 756.5 595 65.9
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.8e-216 755.0 537 71.3
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 8.2e-216 754.2 595 65.4
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.4e-215 753.4 609 65.2
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 3.1e-215 752.3 605 65.1
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.1e-215 752.3 615 64.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.9e-215 751.1 590 66.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-214 750.4 595 66.2
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.5e-214 750.0 537 71.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.5e-214 750.0 590 67.3
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.5e-214 750.0 600 66.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.0e-214 749.6 513 72.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.0e-214 749.6 513 72.9
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.6e-214 749.2 558 68.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.5e-214 748.4 533 70.7
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 5.9e-214 748.0 594 65.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 5.9e-214 748.0 549 69.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 7.7e-214 747.7 597 65.3
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 7.7e-214 747.7 549 69.2
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.0e-213 747.3 513 72.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-213 746.9 587 66.6
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.7e-213 746.5 597 65.2
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 5.0e-213 745.0 549 69.9
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.5e-213 744.6 513 72.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 6.5e-213 744.6 549 69.0
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-212 743.8 513 71.9
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 7.2e-212 741.1 589 65.4
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 9.4e-212 740.7 558 67.4
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.1e-211 739.6 536 69.2
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 2.1e-211 739.6 517 72.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 3.6e-211 738.8 597 64.8
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 4.7e-211 738.4 602 63.1
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.7e-211 738.4 567 68.1
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-210 737.3 517 72.0
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.8e-210 736.5 589 64.2
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.9e-210 735.3 602 63.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 3.9e-210 735.3 517 70.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 5.2e-210 734.9 590 65.3
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 8.8e-210 734.2 589 63.5
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 4.4e-209 731.9 526 70.2
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.4e-209 731.9 597 63.0
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 9.7e-209 730.7 557 66.6
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.7e-208 728.8 607 64.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.4e-207 726.1 514 70.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 2.6e-206 722.6 590 63.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 7.7e-206 721.1 537 67.4
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 5.5e-204 714.9 514 69.8
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.5e-204 714.9 517 68.7
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.6e-203 712.2 591 63.5
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 6.1e-203 711.4 519 69.6
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.1e-203 711.4 515 69.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.0e-203 711.1 515 68.9
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 8.8e-202 707.6 528 67.0
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.6e-201 706.1 528 66.9
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.3e-201 705.7 520 67.9
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.4e-201 705.3 519 68.8
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 7.5e-201 704.5 507 69.2
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 9.7e-201 704.1 533 67.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-200 703.7 519 68.6
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.3e-200 703.7 519 68.6
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.3e-200 703.7 519 69.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-200 703.7 493 71.0
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-200 703.7 523 67.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.2e-200 703.0 534 67.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.8e-200 702.6 519 68.8
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.7e-200 702.2 585 61.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.8e-200 701.8 528 67.4
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 6.3e-200 701.4 524 67.4
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 6.3e-200 701.4 528 66.9
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 6.3e-200 701.4 528 66.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 8.2e-200 701.0 493 69.8
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.1e-199 699.1 533 67.0
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.0e-199 698.0 560 64.5
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.0e-198 696.4 579 63.0
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.5e-198 695.7 533 67.2
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.5e-198 695.7 515 68.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.5e-198 695.7 515 68.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.5e-198 695.7 564 63.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 8.5e-197 691.0 573 62.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 8.0e-195 684.5 529 64.7
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.2e-192 676.4 626 59.4
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.2e-190 670.6 517 65.8
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.7e-189 666.8 515 64.5
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.9e-189 666.0 529 64.5
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.1e-187 659.8 524 64.5
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.2e-185 654.1 515 64.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.5e-185 653.7 587 60.6
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-185 652.5 543 63.7
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.4e-185 652.1 583 59.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.4e-185 652.1 499 66.9
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.2e-184 649.8 589 59.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.2e-184 649.8 594 60.4
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.3e-184 647.9 597 57.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.4e-183 647.1 523 64.6
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-179 633.6 523 61.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-178 630.6 610 55.6
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.7e-177 625.2 532 60.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.7e-176 623.6 585 56.8
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.6e-174 615.5 530 61.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.0e-173 614.4 461 73.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.7e-173 613.6 403 73.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.0e-173 612.1 495 62.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.3e-172 609.4 415 72.0
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.0e-170 602.4 601 54.7
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 6.8e-170 601.7 509 61.1
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.0e-169 600.1 407 73.5
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.1e-167 592.4 518 61.0
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.6e-166 590.5 495 61.0
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.6e-165 584.7 403 72.0
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.7e-147 525.8 518 51.5
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.2e-143 512.7 462 60.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.8e-142 508.4 470 54.3
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.0e-141 506.5 403 64.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 3.0e-133 479.9 522 51.7
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.6e-110 402.9 337 62.9
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-103 381.7 318 64.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.5e-89 333.2 239 68.6
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.1e-62 244.6 157 75.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 4.1e-58 230.3 145 77.9
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 7.5e-44 183.0 159 58.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 7.1e-42 176.4 161 55.9
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 6.0e-41 173.3 157 56.1
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.9e-40 170.6 157 55.4
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.0e-32 146.0 123 58.5
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.1e-30 138.3 98 67.3
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.5e-20 104.0 266 28.9
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.8e-20 103.6 94 59.6
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-18 99.4 202 35.1
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.2e-18 97.4 88 56.8
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.0e-16 91.3 60 75.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-15 89.0 187 33.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 7.4e-15 86.7 121 40.5
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.4e-15 86.7 213 30.5
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 4.8e-14 84.0 115 41.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.4e-13 82.4 80 53.8
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.4e-11 73.6 79 51.9
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.0e-09 67.0 71 54.9
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.3e-06 59.3 57 43.9
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.2e-06 57.0 65 53.8


User provided reference genes

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