Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 3.0e-209 731.5 340 100.0
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 2.7e-141 505.8 305 72.1
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 1.0e-137 493.8 303 70.6
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.8e-137 493.0 307 70.4
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.1e-137 492.3 307 68.4
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 5.2e-137 491.5 306 69.3
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.5e-136 490.0 304 69.1
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 4.4e-136 488.4 307 67.8
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 5.8e-136 488.0 304 68.8
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.7e-135 486.5 304 68.4
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 2.9e-135 485.7 304 68.4
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 6.4e-135 484.6 305 68.5
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 6.4e-135 484.6 304 68.4
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 8.3e-135 484.2 304 67.8
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.9e-134 483.0 308 68.2
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 2.4e-134 482.6 304 68.1
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.4e-134 482.6 304 68.1
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 2.4e-134 482.6 306 67.3
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 5.4e-134 481.5 305 68.2
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 5.4e-134 481.5 305 68.2
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.4e-134 481.5 304 67.8
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 7.0e-134 481.1 304 69.4
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 9.2e-134 480.7 307 68.4
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 9.2e-134 480.7 306 68.6
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 9.2e-134 480.7 304 68.1
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 1.2e-133 480.3 307 66.8
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.2e-133 480.3 304 68.8
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 2.7e-133 479.2 305 67.9
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.7e-133 479.2 304 67.8
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.7e-133 479.2 304 68.1
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.7e-133 479.2 304 68.1
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 2.7e-133 479.2 304 66.1
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 3.5e-133 478.8 304 67.4
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 3.5e-133 478.8 304 65.8
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 3.5e-133 478.8 304 67.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 3.5e-133 478.8 307 69.1
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 3.5e-133 478.8 305 68.5
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 3.5e-133 478.8 304 67.8
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 4.6e-133 478.4 304 68.1
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 4.6e-133 478.4 304 67.8
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 7.8e-133 477.6 304 67.4
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 1.0e-132 477.2 305 66.2
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 1.0e-132 477.2 305 68.5
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.0e-132 477.2 307 67.8
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 1.0e-132 477.2 304 67.4
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.3e-132 476.9 304 68.8
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 1.7e-132 476.5 304 66.4
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 1.7e-132 476.5 304 67.1
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 2.3e-132 476.1 305 68.2
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 3.0e-132 475.7 304 68.8
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 3.0e-132 475.7 304 65.5
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 3.9e-132 475.3 307 67.4
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 5.0e-132 474.9 310 66.8
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 5.0e-132 474.9 310 66.8
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 6.6e-132 474.6 306 66.7
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.6e-132 474.6 306 67.3
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 6.6e-132 474.6 304 65.8
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 8.6e-132 474.2 315 65.7
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.1e-131 473.8 304 66.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.9e-131 473.0 305 67.5
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.9e-131 473.0 307 67.8
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 2.5e-131 472.6 319 64.6
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 3.3e-131 472.2 305 66.9
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 4.3e-131 471.9 304 68.1
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 7.3e-131 471.1 305 67.2
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 1.6e-130 469.9 310 66.8
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.6e-130 469.9 304 65.8
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 2.8e-130 469.2 305 65.2
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 2.8e-130 469.2 304 64.8
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 3.6e-130 468.8 307 68.4
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 4.7e-130 468.4 304 64.5
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.7e-130 468.4 304 64.8
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 6.2e-130 468.0 322 62.7
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 8.0e-130 467.6 309 66.0
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.1e-129 467.2 304 66.8
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 1.1e-129 467.2 304 64.5
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 1.8e-129 466.5 304 67.4
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.8e-129 466.5 305 65.9
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 2.3e-129 466.1 304 66.1
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.0e-129 465.3 295 67.8
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 5.2e-129 464.9 308 65.3
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 6.8e-129 464.5 308 65.9
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.8e-129 464.5 310 65.2
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 8.9e-129 464.2 297 65.7
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.2e-128 463.8 304 65.8
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 2.6e-128 462.6 305 64.6
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.4e-128 462.2 307 66.4
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.4e-128 462.2 307 66.4
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.4e-128 462.2 307 65.8
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 4.4e-128 461.8 305 64.3
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 4.4e-128 461.8 302 65.2
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 2.9e-127 459.1 304 63.5
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.9e-127 459.1 305 65.2
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 2.9e-127 459.1 306 64.7
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 3.7e-127 458.8 308 65.3
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 3.7e-127 458.8 317 64.0
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 4.9e-127 458.4 307 64.8
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.1e-126 457.2 323 62.2
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 1.4e-126 456.8 305 63.9
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 2.4e-126 456.1 304 64.8
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 7.1e-126 454.5 304 62.5
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 7.1e-126 454.5 309 64.7
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 1.6e-125 453.4 304 64.1
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-125 453.0 295 66.1
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 2.3e-124 449.5 305 63.0
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.9e-124 448.7 305 63.3
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 6.6e-124 448.0 305 63.3
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 6.6e-124 448.0 304 64.8
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 8.6e-124 447.6 305 63.6
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 8.6e-124 447.6 304 63.8
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 3.3e-123 445.7 305 62.6
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.3e-123 445.3 307 63.8
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 7.3e-123 444.5 301 63.1
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.6e-122 443.4 303 62.7
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 2.8e-122 442.6 303 62.4
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 3.6e-122 442.2 303 62.4
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 6.2e-122 441.4 305 62.3
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.4e-121 440.3 303 62.0
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 8.9e-121 437.6 275 68.4
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.8e-120 434.9 275 68.0
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.5e-117 425.6 305 60.7
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 3.9e-116 422.2 303 62.4
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.5e-115 420.2 304 60.9
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 3.3e-115 419.1 275 65.5
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 1.2e-114 417.2 313 59.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.1e-114 416.4 303 59.7
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 4.0e-113 412.1 275 65.5
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.2e-113 411.8 280 66.1
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.2e-113 411.8 307 58.6
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 4.4e-112 408.7 303 59.7
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.4e-112 408.7 310 58.1
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 1.7e-111 406.8 305 59.0
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 6.0e-109 398.3 307 58.3
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.8e-106 389.4 305 56.7
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.4e-104 382.5 307 58.3
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.0e-100 370.9 295 60.7
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.6e-100 368.2 308 56.5
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 6.6e-100 368.2 308 56.5
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.2e-94 349.4 217 69.6
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.3e-92 343.2 306 52.0
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 4.3e-91 339.0 307 52.8
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 9.6e-91 337.8 225 65.8
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 7.4e-75 285.0 260 52.3
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.1e-68 262.3 307 43.6
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 4.1e-65 252.7 167 64.7
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.1e-59 234.6 266 44.4
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.1e-51 208.0 125 72.0
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 8.5e-47 191.8 120 68.3
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.3e-42 175.3 106 68.9
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.2e-39 167.2 295 34.9
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 4.4e-35 152.9 301 32.6
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 8.6e-31 138.7 239 35.1
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.0e-28 130.2 94 58.5
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 4.4e-27 126.3 338 27.5
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 8.9e-12 75.5 45 71.1
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 2.2e-10 70.9 100 38.0


User provided reference genes

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