Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 6.2e-135 484.2 252 100.0
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 3.4e-77 292.4 269 60.6
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 2.9e-76 289.3 275 58.9
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 5.0e-76 288.5 225 67.1
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 5.0e-76 288.5 280 57.9
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 4.2e-75 285.4 273 56.8
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 5.5e-75 285.0 232 65.5
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 9.4e-75 284.3 267 59.6
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 1.6e-74 283.5 274 57.7
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.1e-74 283.1 226 66.4
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.6e-74 282.3 286 58.0
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 6.1e-74 281.6 224 67.0
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 7.9e-74 281.2 213 69.0
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 7.9e-74 281.2 218 67.4
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 7.9e-74 281.2 226 65.9
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.0e-73 280.8 288 57.3
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.4e-73 280.4 276 60.1
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 1.4e-73 280.4 229 63.3
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.8e-73 280.0 227 66.5
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.8e-73 280.0 224 66.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 1.8e-73 280.0 224 66.1
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.8e-73 280.0 264 61.7
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 3.0e-73 279.3 267 59.9
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.9e-73 278.9 225 67.6
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 5.1e-73 278.5 263 59.3
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 5.1e-73 278.5 272 58.5
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 8.8e-73 277.7 232 64.7
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.1e-72 277.3 288 59.4
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 3.3e-72 275.8 260 58.5
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 3.3e-72 275.8 260 58.5
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 4.3e-72 275.4 284 56.0
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 5.7e-72 275.0 280 55.7
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 9.7e-72 274.2 213 68.1
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 9.7e-72 274.2 233 63.9
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 1.3e-71 273.9 277 55.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.3e-71 273.9 225 64.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.3e-71 273.9 227 64.3
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.2e-71 273.1 233 62.7
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 2.8e-71 272.7 233 62.7
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 2.8e-71 272.7 218 65.1
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 3.7e-71 272.3 277 55.2
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 3.7e-71 272.3 233 62.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.8e-71 271.9 233 61.8
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 8.2e-71 271.2 257 57.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 8.2e-71 271.2 222 64.0
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 8.2e-71 271.2 217 65.0
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 8.2e-71 271.2 233 63.9
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 8.2e-71 271.2 218 65.1
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.1e-70 270.8 218 63.8
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.4e-70 270.4 236 61.9
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.4e-70 270.4 211 66.4
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.8e-70 270.0 275 54.5
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.8e-70 270.0 275 54.5
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 3.1e-70 269.2 223 64.6
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 6.9e-70 268.1 226 61.5
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 9.1e-70 267.7 194 70.1
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.5e-69 266.9 275 54.2
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.5e-69 266.9 265 58.9
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 2.0e-69 266.5 219 65.8
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 2.0e-69 266.5 253 57.7
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 2.6e-69 266.2 277 53.8
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 5.9e-69 265.0 226 64.6
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 7.7e-69 264.6 194 70.1
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.0e-68 264.2 234 62.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.3e-68 263.8 234 62.4
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.3e-68 263.8 234 62.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.2e-68 263.1 230 62.6
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 3.8e-68 262.3 245 57.1
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 8.5e-68 261.2 287 52.3
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.5e-67 259.6 199 67.8
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.5e-67 259.6 233 60.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 4.2e-67 258.8 199 67.8
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.5e-67 258.5 198 67.2
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 9.4e-67 257.7 198 67.2
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.4e-67 257.7 198 67.2
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.1e-66 256.5 198 66.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 7.9e-66 254.6 246 56.5
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.0e-65 254.2 224 60.3
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.3e-65 253.1 183 68.3
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 2.3e-65 253.1 211 65.4
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 2.3e-65 253.1 268 55.6
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 6.7e-65 251.5 197 66.5
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 9.7e-64 247.7 183 66.7
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 4.8e-63 245.4 212 58.5
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 3.1e-62 242.7 216 60.2
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 9.1e-62 241.1 263 52.5
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 1.3e-60 237.3 325 48.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.7e-60 236.9 173 70.5
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 2.2e-60 236.5 170 72.4
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 3.8e-60 235.7 213 62.4
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 6.5e-60 235.0 198 63.6
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 4.7e-58 228.8 245 58.4
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 6.1e-58 228.4 187 65.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 1.5e-56 223.8 201 59.2
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.5e-56 223.8 217 55.8
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 2.0e-56 223.4 248 51.2
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 3.3e-56 222.6 190 61.1
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 6.3e-55 218.4 196 60.2
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 3.5e-53 212.6 193 59.1
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 5.0e-52 208.8 286 46.9
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 8.5e-52 208.0 244 52.5
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 4.7e-50 202.2 214 57.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 4.0e-49 199.1 192 52.6
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 2.7e-45 186.4 184 59.8
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 5.9e-45 185.3 161 63.4
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 4.2e-43 179.1 170 59.4
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 5.4e-38 162.2 258 43.0
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 4.5e-37 159.1 303 38.3
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 1.6e-34 150.6 167 50.9
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 8.0e-34 148.3 82 87.8
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.4e-33 147.5 121 63.6
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.2e-32 144.4 125 60.0
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 1.6e-29 134.0 197 38.6
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 3.5e-29 132.9 130 55.4
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 3.3e-27 126.3 183 42.1
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 7.3e-27 125.2 195 36.4
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.9e-23 113.2 118 55.1
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 8.3e-23 111.7 227 37.0
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 6.6e-20 102.1 97 57.7
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 3.3e-19 99.8 97 56.7
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 4.3e-19 99.4 108 53.7
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 8.0e-18 95.1 65 66.2
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.8e-17 94.0 52 82.7
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 7.5e-16 88.6 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 2.9e-15 86.7 50 80.0
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.3e-12 77.8 93 49.5
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 1.9e-11 73.9 45 77.8
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.6e-10 69.7 86 47.7
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 5.2e-09 65.9 117 36.8
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.3e-07 61.2 78 47.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.4e-06 57.0 85 48.2


User provided reference genes

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