Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0037 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 1.1e-78 296.6 150 100.0
CDE02G2900 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 3.2e-54 215.3 201 64.2
TAR633G0169 Trochodendron aralioides HOM05D005353 ORTHO05D006248 4.8e-42 174.9 132 68.9
Sc10g0003710 Simmondsia chinensis HOM05D005353 ORTHO05D006248 5.3e-41 171.4 113 75.2
CiPaw.02G068200 Carya illinoinensis HOM05D005353 ORTHO05D006248 6.9e-41 171.0 114 75.4
Hma1.2p1_1067F.1_g253910 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 6.9e-41 171.0 114 77.2
AUR62022362 Chenopodium quinoa HOM05D005353 ORTHO05D006248 4.5e-40 168.3 148 63.5
QL06p014836 Quercus lobata HOM05D005353 ORTHO05D006248 5.8e-40 167.9 114 76.3
Atru.chr4.3195 Acer truncatum HOM05D005353 ORTHO05D006248 1.3e-39 166.8 155 63.9
AUR62034345 Chenopodium quinoa HOM05D005353 ORTHO05D006248 1.7e-39 166.4 113 73.5
Manes.12G155100 Manihot esculenta HOM05D005353 ORTHO05D006248 1.7e-39 166.4 158 60.8
Cfa015762 Carpinus fangiana HOM05D005353 ORTHO05D006248 2.2e-39 166.0 115 77.4
Haze_00741 Corylus avellana HOM05D005353 ORTHO05D006248 2.2e-39 166.0 115 77.4
MBI18_g03863_MAGBIO Magnolia biondii HOM05D005353 ORTHO05D006248 2.9e-39 165.6 114 73.7
HPP92_012759 Vanilla planifolia HOM05D005353 ORTHO05D006248 2.9e-39 165.6 113 71.7
GSVIVG01017718001 Vitis vinifera HOM05D005353 ORTHO05D006248 2.9e-39 165.6 154 63.0
CSS0044252 Camellia sinensis var. sinensis HOM05D005353 ORTHO05D006248 3.8e-39 165.2 114 76.3
EL10Ac1g01664 Beta vulgaris HOM05D005353 ORTHO05D006248 4.9e-39 164.9 113 72.6
MSTRG.14933 Avicennia marina HOM05D005353 ORTHO05D006248 6.4e-39 164.5 110 76.4
Cc04_g14300 Coffea canephora HOM05D005353 ORTHO05D006248 8.4e-39 164.1 156 60.3
HanXRQChr05g0148921 Helianthus annuus HOM05D005353 ORTHO05D006248 8.4e-39 164.1 113 72.6
Solyc07g042930.3 Solanum lycopersicum HOM05D005353 ORTHO05D006248 8.4e-39 164.1 141 60.3
Eucgr.H04153 Eucalyptus grandis HOM05D005353 ORTHO05D006248 1.4e-38 163.3 111 73.9
PGSC0003DMG401013561 Solanum tuberosum HOM05D005353 ORTHO05D006248 1.4e-38 163.3 141 60.3
Duzib116G0935 Durio zibethinus HOM05D005353 ORTHO05D006248 1.9e-38 162.9 114 72.8
TWI73G0458 Tripterygium wilfordii HOM05D005353 ORTHO05D006248 1.9e-38 162.9 114 74.6
Oeu002498.1 Olea europaea HOM05D005353 ORTHO05D006248 3.2e-38 162.2 113 71.7
Ciclev10021112m.g Citrus clementina HOM05D005353 ORTHO05D006248 4.2e-38 161.8 155 61.3
Nitab4.5_0000019g0100 Nicotiana tabacum HOM05D005353 ORTHO05D006248 4.2e-38 161.8 122 67.2
Sabra10G0004000 Salix brachista HOM05D005353 ORTHO05D006248 4.2e-38 161.8 112 73.2
SalBow7G1146 Salvia bowleyana HOM05D005353 ORTHO05D006248 4.2e-38 161.8 106 76.4
Sopen07g022530 Solanum pennellii HOM05D005353 ORTHO05D006248 4.2e-38 161.8 141 59.6
Thecc.08G167300 Theobroma cacao HOM05D005353 ORTHO05D006248 4.2e-38 161.8 114 71.1
Peaxi162Scf01347g00135 Petunia axillaris HOM05D005353 ORTHO05D006248 5.4e-38 161.4 114 70.2
Cpa.g.sc146.5 Carica papaya HOM05D005353 ORTHO05D006248 7.1e-38 161.0 113 70.8
Gohir.A08G228300 Gossypium hirsutum HOM05D005353 ORTHO05D006248 7.1e-38 161.0 114 72.8
Nitab4.5_0007722g0010 Nicotiana tabacum HOM05D005353 ORTHO05D006248 7.1e-38 161.0 118 67.8
PSO210G1641 Papaver somniferum HOM05D005353 ORTHO05D006248 9.3e-38 160.6 113 71.7
PSO761G0146 Papaver somniferum HOM05D005353 ORTHO05D006248 9.3e-38 160.6 157 61.8
ATR0796G336 Amborella trichopoda HOM05D005353 ORTHO05D006248 1.2e-37 160.2 158 56.3
FvH4_4g21840 Fragaria vesca HOM05D005353 ORTHO05D006248 1.2e-37 160.2 114 69.3
FAN07G1699 Fragaria x ananassa HOM05D005353 ORTHO05D006248 1.2e-37 160.2 114 69.3
FAN12G4199 Fragaria x ananassa HOM05D005353 ORTHO05D006248 1.2e-37 160.2 114 69.3
Potri.010G004600 Populus trichocarpa HOM05D005353 ORTHO05D006248 1.2e-37 160.2 112 72.3
Aa31LG8G4490 Aethionema arabicum HOM05D005353 ORTHO05D006248 1.6e-37 159.8 157 57.3
Aqoxy2G00444 Aquilegia oxysepala HOM05D005353 ORTHO05D006248 1.6e-37 159.8 108 74.1
arahy.Tifrunner.gnm1.ann1.XSBG43 Arachis hypogaea HOM05D005353 ORTHO05D006248 2.1e-37 159.5 114 71.9
Hund17553 Selenicereus undatus HOM05D005353 ORTHO05D006248 2.1e-37 159.5 121 67.8
arahy.Tifrunner.gnm1.ann1.ETFP64 Arachis hypogaea HOM05D005353 ORTHO05D006248 2.7e-37 159.1 114 71.9
CANSAT78G1361 Cannabis sativa HOM05D005353 ORTHO05D006248 2.7e-37 159.1 111 74.8
RcHm_v2.0_Chr4g0428081 Rosa chinensis HOM05D005353 ORTHO05D006248 4.6e-37 158.3 114 68.4
SGA_v2.0_scaffold73G24528 Striga asiatica HOM05D005353 ORTHO05D006248 4.6e-37 158.3 117 67.5
Cfa015759 Carpinus fangiana HOM05D005353 ORTHO05D006248 6.0e-37 157.9 115 74.8
ECA246G2061 Erigeron canadensis HOM05D005353 ORTHO05D006248 6.0e-37 157.9 113 70.8
Gorai.004G265200 Gossypium raimondii HOM05D005353 ORTHO05D006248 6.0e-37 157.9 114 71.9
Phvul.003G125100 Phaseolus vulgaris HOM05D005353 ORTHO05D006248 6.0e-37 157.9 118 66.9
Migut.M00009 Erythranthe guttata HOM05D005353 ORTHO05D006248 7.9e-37 157.5 109 70.6
Gohir.D08G248600 Gossypium hirsutum HOM05D005353 ORTHO05D006248 7.9e-37 157.5 114 71.9
Lalb_Chr12g0200451 Lupinus albus HOM05D005353 ORTHO05D006248 7.9e-37 157.5 111 70.3
PGR004G1856 Punica granatum HOM05D005353 ORTHO05D006248 7.9e-37 157.5 154 59.7
FAN17G0053 Fragaria x ananassa HOM05D005353 ORTHO05D006248 1.0e-36 157.1 114 68.4
Peaxi162Scf00322g00917 Petunia axillaris HOM05D005353 ORTHO05D006248 1.0e-36 157.1 119 66.4
Carub.0003s1733 Capsella rubella HOM05D005353 ORTHO05D006248 1.3e-36 156.8 157 55.4
DCAR_023424 Daucus carota HOM05D005353 ORTHO05D006248 1.3e-36 156.8 115 67.8
Thhalv10021096m.g Eutrema salsugineum HOM05D005353 ORTHO05D006248 1.3e-36 156.8 165 54.5
Actinidia39944 Actinidia chinensis HOM05D005353 ORTHO05D006248 1.8e-36 156.4 223 44.8
VMungo1215G2294 Vigna mungo HOM05D005353 ORTHO05D006248 2.3e-36 156.0 118 66.1
Haze_00742 Corylus avellana HOM05D005353 ORTHO05D006248 3.0e-36 155.6 115 73.9
AT3G17611 Arabidopsis thaliana HOM05D005353 ORTHO05D006248 3.9e-36 155.2 157 54.8
Glyma.13G116600 Glycine max HOM05D005353 ORTHO05D006248 3.9e-36 155.2 118 66.1
Lsat_1_v5_gn_6_61961 Lactuca sativa HOM05D005353 ORTHO05D006248 3.9e-36 155.2 109 69.7
CARHR092930 Cardamine hirsuta HOM05D005353 ORTHO05D006248 5.1e-36 154.8 157 55.4
BraA05t22052Z Brassica rapa HOM05D005353 ORTHO05D006248 6.7e-36 154.5 165 53.3
Glyma.17G043300 Glycine max HOM05D005353 ORTHO05D006248 6.7e-36 154.5 118 66.1
BcaC09g48719 Brassica carinata HOM05D005353 ORTHO05D006248 8.7e-36 154.1 157 54.8
A01p36730 Brassica napus HOM05D005353 ORTHO05D006248 1.1e-35 153.7 157 54.8
BraA01t03734Z Brassica rapa HOM05D005353 ORTHO05D006248 1.1e-35 153.7 157 54.8
Ca_21356_v3 Cicer arietinum L. HOM05D005353 ORTHO05D006248 1.1e-35 153.7 157 56.7
Lj2g0027327 Lotus japonicus HOM05D005353 ORTHO05D006248 1.5e-35 153.3 114 68.4
BcaC05g28769 Brassica carinata HOM05D005353 ORTHO05D006248 1.9e-35 152.9 165 52.1
C05p48760 Brassica napus HOM05D005353 ORTHO05D006248 1.9e-35 152.9 165 52.1
BolC5t33612H Brassica oleracea HOM05D005353 ORTHO05D006248 1.9e-35 152.9 165 52.1
COL.COLO4_25111 Corchorus olitorius HOM05D005353 ORTHO05D006248 1.9e-35 152.9 156 60.3
AL3G30690 Arabidopsis lyrata HOM05D005353 ORTHO05D006248 2.5e-35 152.5 157 53.5
C01p46630 Brassica napus HOM05D005353 ORTHO05D006248 2.5e-35 152.5 157 54.1
BolC1t04628H Brassica oleracea HOM05D005353 ORTHO05D006248 2.5e-35 152.5 157 54.1
A05p32220 Brassica napus HOM05D005353 ORTHO05D006248 3.3e-35 152.1 112 65.2
Lsat_1_v5_gn_0_37861 Lactuca sativa HOM05D005353 ORTHO05D006248 3.3e-35 152.1 110 70.0
Sp3g15750 Schrenkiella parvula HOM05D005353 ORTHO05D006248 3.3e-35 152.1 157 54.1
vmacro15495 Vaccinium macrocarpon HOM05D005353 ORTHO05D006248 3.3e-35 152.1 154 58.4
BcaB04g20833 Brassica carinata HOM05D005353 ORTHO05D006248 5.6e-35 151.4 157 53.5
Os01g0283500 Oryza sativa ssp. japonica HOM05D005353 ORTHO05D006248 5.6e-35 151.4 113 64.6
TPR.G12683 Trifolium pratense HOM05D005353 ORTHO05D006248 5.6e-35 151.4 114 65.8
CAN.G1337.25 Capsicum annuum HOM05D005353 ORTHO05D006248 7.4e-35 151.0 118 62.7
Psat4g020440 Pisum sativum HOM05D005353 ORTHO05D006248 7.4e-35 151.0 118 64.4
THA.LOC104821816 Tarenaya hassleriana HOM05D005353 ORTHO05D006248 9.6e-35 150.6 155 57.4
Sed0018181 Sechium edule HOM05D005353 ORTHO05D006248 2.1e-34 149.4 110 68.2
Rhsim02G0049500 Rhododendron simsii HOM05D005353 ORTHO05D006248 6.2e-34 147.9 154 57.1
SHI11368 Sapria himalayana HOM05D005353 ORTHO05D006248 1.1e-33 147.1 109 67.9
Zm00001eb227080 Zea mays HOM05D005353 ORTHO05D006248 1.1e-33 147.1 111 63.1
CAN.G357.8 Capsicum annuum HOM05D005353 ORTHO05D006248 1.4e-33 146.7 118 61.9
Prupe.1G209100 Prunus persica HOM05D005353 ORTHO05D006248 2.4e-33 146.0 114 64.9
Lj6A705T54 Lonicera japonica HOM05D005353 ORTHO05D006248 4.0e-33 145.2 110 67.3
SEGI_40739 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.5e-32 143.3 153 54.9
CsaV3_4G030510 Cucumis sativus L. HOM05D005353 ORTHO05D006248 2.6e-32 142.5 111 66.7
Solyc05g016380.4 Solanum lycopersicum HOM05D005353 ORTHO05D006248 1.3e-31 140.2 139 54.0
Zm00001eb332500 Zea mays HOM05D005353 ORTHO05D006248 1.3e-31 140.2 111 61.3
MELO3C008914.2 Cucumis melo HOM05D005353 ORTHO05D006248 1.7e-31 139.8 111 64.0
Medtr4g123573 Medicago truncatula HOM05D005353 ORTHO05D006248 2.2e-31 139.4 116 62.1
CAN.G1337.26 Capsicum annuum HOM05D005353 ORTHO05D006248 3.8e-31 138.7 180 46.7
ClCG04G002200 Citrullus lanatus HOM05D005353 ORTHO05D006248 6.4e-31 137.9 111 63.1
Hma1.2p1_3133F.1_g332970 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 2.4e-30 136.0 90 77.8
unitig_746.g26623 Utricularia gibba HOM05D000651 ORTHO05D001126 6.0e-29 131.3 107 63.6
Pp3c9_8740 Physcomitrium patens HOM05D005353 ORTHO05D006248 9.3e-22 107.5 107 50.5
Pp3c15_4650 Physcomitrium patens HOM05D005353 ORTHO05D006248 1.2e-21 107.1 107 50.5
Dinv29491 Davidia involucrata HOM05D005353 ORTHO05D006248 1.6e-21 106.7 111 54.1
Mapoly0061s0084 Marchantia polymorpha HOM05D005353 ORTHO05D006248 2.1e-21 106.3 107 51.4
MD13G1136300 Malus domestica HOM05D005353 ORTHO05D006248 2.7e-21 105.9 85 60.0
PGSC0003DMG400037053 Solanum tuberosum HOM05D005353 ORTHO05D006248 1.8e-17 93.2 98 52.0
CBR_g40142 Chara braunii HOM05D005353 ORTHO05D006248 9.0e-17 90.9 111 46.8
SEGI_08776 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 5.0e-15 85.1 77 58.4
SEGI_33584 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 2.5e-14 82.8 73 61.6
Cre03.g204400 Chlamydomonas reinhardtii HOM05D005353 ORTHO05D006248 1.0e-12 77.4 101 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2528 Anthoceros agrestis HOM05D005353 ORTHO05D006248 9.7e-11 70.9 113 39.8
Lsat_1_v5_gn_1_56360 Lactuca sativa HOM05D006729 ORTHO05D008502 3.8e-07 58.9 119 37.8
Cre01.g050350 Chlamydomonas reinhardtii HOM05D006729 ORTHO05D008502 8.5e-07 57.8 97 38.1
SEGI_10602 Sequoiadendron giganteum HOM05D006729 ORTHO05D008502 8.5e-07 57.8 88 40.9
MSTRG.26567 Avicennia marina HOM05D006729 ORTHO05D008502 1.1e-06 57.4 102 38.2
Actinidia06196 Actinidia chinensis HOM05D006729 ORTHO05D008502 1.4e-06 57.0 111 40.5
SMO367G0940 Selaginella moellendorffii HOM05D005353 ORTHO05D006248 1.4e-06 57.0 72 43.1
MD12G1049100 Malus domestica HOM05D006729 ORTHO05D008502 2.5e-06 56.2 102 38.2
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 3.2e-06 55.8 96 42.7
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 3.2e-06 55.8 105 40.0
EL10Ac5g11780 Beta vulgaris HOM05D006729 ORTHO05D008502 4.2e-06 55.5 101 40.6
Rhsim04G0130300 Rhododendron simsii HOM05D006729 ORTHO05D008502 4.2e-06 55.5 110 37.3
RcHm_v2.0_Chr3g0477721 Rosa chinensis HOM05D006729 ORTHO05D008502 4.2e-06 55.5 102 39.2
Hma1.2p1_0304F.1_g119200 Hydrangea macrophylla HOM05D006729 ORTHO05D008502 5.5e-06 55.1 104 39.4
Hma1.2p1_0304F.1_g119210 Hydrangea macrophylla HOM05D006729 ORTHO05D008502 5.5e-06 55.1 104 39.4
Cpa.g.sc85.5 Carica papaya HOM05D006729 ORTHO05D008502 7.2e-06 54.7 111 40.5
GSVIVG01022493001 Vitis vinifera HOM05D006729 ORTHO05D008502 7.2e-06 54.7 110 37.3
CARHR168850 Cardamine hirsuta HOM05D006729 ORTHO05D008502 9.4e-06 54.3 79 46.8
AUR62036295 Chenopodium quinoa HOM05D006729 ORTHO05D008502 9.4e-06 54.3 101 37.6
FvH4_6g21260 Fragaria vesca HOM05D006729 ORTHO05D008502 9.4e-06 54.3 110 36.4
FAN05G4950 Fragaria x ananassa HOM05D006729 ORTHO05D008502 9.4e-06 54.3 110 35.5
FAN14G3257 Fragaria x ananassa HOM05D006729 ORTHO05D008502 9.4e-06 54.3 110 36.4
Mapoly0022s0048 Marchantia polymorpha HOM05D006729 ORTHO05D008502 9.4e-06 54.3 102 39.2
vmacro08860 Vaccinium macrocarpon HOM05D006729 ORTHO05D008502 9.4e-06 54.3 107 37.4


User provided reference genes

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