Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 0.0e+00 1615.9 803 100.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.5e-283 979.5 809 61.4
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 9.0e-273 943.7 809 58.2
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 7.7e-272 940.6 810 58.8
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.6e-269 931.8 809 58.6
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.1e-267 926.8 809 58.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 3.1e-265 918.7 809 58.3
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 3.1e-265 918.7 814 57.7
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.3e-263 913.3 814 57.2
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.7e-263 912.9 813 57.4
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.2e-263 912.5 814 56.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 2.2e-263 912.5 812 57.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 8.5e-263 910.6 812 57.0
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 8.5e-263 910.6 811 57.5
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.2e-262 907.5 814 56.1
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 7.2e-262 907.5 814 56.1
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.6e-261 906.4 812 57.0
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 8.8e-260 900.6 811 56.8
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 7.4e-259 897.5 815 56.3
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 4.8e-258 894.8 808 56.1
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.8e-257 892.9 816 56.4
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.4e-257 892.5 816 56.4
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.3e-255 886.7 808 57.8
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.5e-254 883.2 812 57.1
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 4.2e-254 881.7 817 55.6
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 2.1e-253 879.4 811 55.6
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 4.7e-253 878.2 816 54.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.0e-252 877.1 811 55.2
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.6e-251 872.5 808 54.0
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 2.6e-251 872.5 807 54.6
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.3e-251 872.1 806 54.8
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 4.4e-251 871.7 812 55.7
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.5e-251 870.9 810 55.2
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 9.7e-251 870.5 808 56.9
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.2e-250 869.4 809 55.5
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.7e-250 868.6 810 55.2
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.1e-249 867.1 847 52.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 4.1e-249 865.1 807 55.6
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 7.0e-249 864.4 814 54.5
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.6e-248 863.2 812 54.8
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.5e-248 861.7 808 54.3
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 7.7e-248 860.9 805 55.0
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.7e-247 859.8 873 52.1
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.8e-247 858.6 811 54.4
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 6.5e-247 857.8 815 55.1
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.1e-246 857.1 808 53.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 5.5e-246 854.7 810 53.2
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.2e-245 853.6 812 55.7
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.0e-244 850.5 809 55.9
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 8.8e-244 847.4 815 53.7
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 5.7e-243 844.7 814 53.9
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 9.8e-243 844.0 785 55.2
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 2.2e-242 842.8 813 54.7
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 2.2e-242 842.8 811 53.9
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 6.3e-242 841.3 809 54.4
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.1e-241 840.5 805 54.2
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.8e-241 839.7 807 53.2
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.8e-241 839.7 812 53.2
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 3.5e-240 835.5 807 53.9
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 4.5e-240 835.1 804 53.4
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 7.7e-240 834.3 806 53.8
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 5.0e-239 831.6 814 53.4
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.0e-239 831.6 873 50.7
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 8.5e-239 830.9 804 53.2
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 2.5e-238 829.3 813 52.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.5e-238 828.2 810 52.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 5.5e-238 828.2 809 53.5
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 5.5e-238 828.2 812 52.8
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 7.2e-238 827.8 827 54.5
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.8e-236 823.2 814 52.3
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.6e-235 819.3 816 52.2
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.6e-235 819.3 813 52.2
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.6e-235 819.3 815 52.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.6e-235 819.3 813 52.5
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 9.8e-235 817.4 814 50.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.7e-234 816.6 817 52.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.4e-233 813.5 822 52.4
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 3.1e-233 812.4 814 53.2
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 3.1e-233 812.4 814 52.5
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 3.1e-233 812.4 814 52.5
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.2e-232 810.4 814 52.3
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 8.6e-231 804.3 811 52.3
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 7.3e-230 801.2 815 51.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 9.5e-230 800.8 818 51.8
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.2e-229 800.4 804 50.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 6.1e-229 798.1 824 51.0
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 8.0e-229 797.7 837 51.0
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 4.0e-228 795.4 812 53.6
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 9.8e-227 790.8 816 53.2
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.1e-213 746.5 811 49.3
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.3e-210 737.3 624 58.2
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 4.1e-209 732.3 813 48.5
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.5e-208 729.2 743 52.5
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.7e-205 718.8 824 47.8
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 8.1e-205 718.0 804 47.3
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 8.9e-204 714.5 582 61.9
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.3e-202 710.7 809 47.7
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.9e-190 670.2 883 43.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.1e-185 654.4 826 43.6
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.1e-184 650.2 809 44.0
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.6e-181 640.6 548 57.8
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 7.2e-161 572.0 811 40.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.4e-155 553.1 812 39.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.8e-154 549.7 461 59.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.8e-149 533.5 845 37.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.2e-146 523.9 839 36.6
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 9.7e-142 508.4 815 38.3
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 8.2e-141 505.4 469 56.3
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.2e-136 491.5 839 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 5.2e-135 486.1 823 36.9
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.3e-127 460.7 587 44.1
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.1e-124 450.3 810 36.0
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 2.5e-121 440.7 806 37.6
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.6e-120 438.0 679 38.6
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.8e-119 434.5 840 34.9
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.0e-111 408.7 816 34.7
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.2e-104 382.9 338 57.7
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 9.5e-89 332.4 758 30.6
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.4e-87 328.6 421 44.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 6.0e-75 286.6 405 39.8
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 3.4e-62 244.2 156 69.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.4e-60 238.0 745 28.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.6e-54 218.0 273 45.8
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.3e-53 215.7 274 45.3
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.8e-53 214.2 273 45.4
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 5.7e-49 200.3 891 24.6
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.6e-46 191.4 161 64.0
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.4e-38 164.5 173 49.7
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 5.5e-36 157.1 204 44.6
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 6.3e-32 143.7 458 26.0
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 9.1e-31 139.8 104 67.3
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 8.5e-21 106.7 133 43.6
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.3e-18 98.6 130 40.0
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 4.0e-18 97.8 86 55.8
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.1e-15 88.2 129 41.1
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.6e-14 85.9 60 70.0
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.5e-12 79.3 70 54.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 7.2e-12 77.0 90 43.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.7e-08 65.9 83 47.0
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.4e-07 62.8 96 38.5
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.4e-07 62.0 56 58.9
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 2.4e-07 62.0 76 42.1
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.6e-06 59.3 105 34.3
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.0e-06 58.9 110 35.5
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 5.9e-06 57.4 37 75.7
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 5.9e-06 57.4 37 75.7
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 5.9e-06 57.4 37 75.7


User provided reference genes

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