Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.4e-129 463.8 245 100.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 6.1e-63 245.0 236 62.3
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.0e-62 244.2 241 61.0
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 2.3e-62 243.0 237 61.2
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 3.0e-62 242.7 243 60.1
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 4.0e-62 242.3 239 60.3
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.0e-62 242.3 236 61.4
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 5.2e-62 241.9 238 60.9
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 6.8e-62 241.5 236 60.6
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.0e-61 240.0 247 58.7
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.4e-61 238.8 236 60.2
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 4.4e-61 238.8 237 59.9
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.7e-61 238.4 237 59.9
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.3e-60 237.3 239 59.0
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 8.3e-60 234.6 236 58.9
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 1.1e-59 234.2 236 59.3
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.4e-59 233.8 233 59.7
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 2.4e-59 233.0 233 60.1
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 3.1e-59 232.6 236 58.5
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 4.1e-59 232.3 238 59.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 5.4e-59 231.9 246 58.1
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.2e-58 230.7 244 58.2
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 4.5e-58 228.8 238 58.8
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.7e-57 226.9 236 58.5
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.3e-57 226.5 277 53.4
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.3e-57 226.5 214 61.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 2.9e-57 226.1 212 59.4
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 2.9e-57 226.1 211 62.1
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 3.8e-57 225.7 236 57.6
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 5.0e-57 225.3 214 62.1
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 8.6e-57 224.6 242 57.9
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 8.6e-57 224.6 238 57.6
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.5e-56 223.8 242 56.2
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.5e-56 223.8 237 56.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 4.2e-56 222.2 239 59.4
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 7.2e-56 221.5 188 68.1
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 7.2e-56 221.5 236 58.5
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 7.2e-56 221.5 239 56.9
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 1.2e-55 220.7 217 60.8
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 2.1e-55 219.9 238 59.7
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.8e-55 219.5 270 51.5
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 6.1e-55 218.4 241 58.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.4e-54 217.2 236 55.9
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.8e-54 216.9 236 57.2
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.8e-54 216.9 237 56.5
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.3e-54 216.5 159 76.1
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 3.0e-54 216.1 200 63.5
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 3.0e-54 216.1 236 56.4
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.5e-53 213.8 236 55.5
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 2.2e-52 209.9 238 56.3
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.8e-51 206.8 211 57.3
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 4.1e-51 205.7 241 55.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.3e-48 196.1 100 98.0
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 7.3e-48 194.9 240 52.1
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.6e-47 193.7 210 54.3
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 6.1e-47 191.8 236 53.0
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.0e-46 191.0 179 61.5
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.2e-46 188.7 236 51.7
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 6.8e-46 188.3 194 57.7
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 6.8e-46 188.3 153 65.4
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 5.7e-45 185.3 211 52.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 7.5e-45 184.9 209 54.1
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 4.9e-44 182.2 237 50.2
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.9e-44 182.2 230 49.6
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.4e-43 179.9 238 51.3
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 3.2e-43 179.5 219 51.6
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.2e-42 177.6 90 96.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.6e-42 177.2 90 95.6
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.0e-42 176.8 91 95.6
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 2.7e-42 176.4 204 58.3
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 4.6e-42 175.6 98 87.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 5.9e-42 175.3 92 94.6
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 5.9e-42 175.3 200 54.5
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 2.3e-41 173.3 89 94.4
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 5.0e-41 172.2 90 94.4
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 6.6e-41 171.8 90 95.6
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 3.3e-40 169.5 98 87.8
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.3e-40 169.5 200 54.0
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 4.3e-40 169.1 90 93.3
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.2e-39 167.5 249 46.2
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.6e-39 166.0 200 53.0
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.0e-39 164.9 201 53.2
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-38 164.1 200 51.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 8.9e-38 161.4 178 56.7
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 2.0e-37 160.2 93 88.2
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 2.6e-37 159.8 90 90.0
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 3.4e-37 159.5 200 52.5
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 2.9e-36 156.4 202 52.0
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 2.9e-36 156.4 101 87.1
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 2.7e-34 149.8 197 48.2
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.6e-34 149.1 198 50.5
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.1e-32 144.4 131 58.0
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 1.9e-32 143.7 200 48.0
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 4.3e-32 142.5 238 44.5
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 5.6e-32 142.1 240 42.1
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 9.5e-32 141.4 175 49.7
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.6e-31 140.6 73 93.2
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.8e-31 139.8 186 48.9
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.0e-30 136.0 216 44.0
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 5.2e-30 135.6 277 40.1
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.7e-28 130.6 279 39.1
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 1.6e-26 124.0 253 38.7
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 3.5e-26 122.9 98 70.4
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.3e-25 120.9 103 67.0
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.5e-24 117.5 217 39.2
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 4.3e-24 115.9 296 35.1
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.1e-22 111.3 346 32.1
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 3.1e-22 109.8 59 88.1
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.8e-21 105.5 177 42.4
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.3e-20 104.4 61 88.5
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.7e-20 104.0 171 45.6
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.1e-16 91.3 175 38.9
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 9.6e-16 88.2 292 32.5
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.6e-15 87.4 184 39.1
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 2.1e-15 87.0 48 89.6
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 2.1e-15 87.0 48 89.6
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 3.1e-14 83.2 140 39.3
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.2e-14 82.4 155 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 9.0e-14 81.6 167 38.9
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.2e-12 77.0 36 97.2
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.1e-11 74.7 135 43.0
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 6.0e-10 68.9 62 62.9
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.0e-09 68.2 47 78.7
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 1.7e-09 67.4 61 60.7
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 5.6e-08 62.4 138 39.1
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 7.3e-08 62.0 37 81.1
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 9.6e-08 61.6 35 88.6
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 6.9e-06 55.5 36 72.2


User provided reference genes

Program Settings