Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.5e-36 154.8 75 100.0
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.1e-14 82.0 43 95.3
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 6.3e-11 70.5 71 50.7
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 4.1e-10 67.8 50 66.0
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 7.0e-10 67.0 61 50.8
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 3.5e-09 64.7 63 47.6
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.5e-09 64.7 61 49.2
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 4.5e-09 64.3 52 55.8
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 4.5e-09 64.3 52 55.8
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 5.9e-09 63.9 61 49.2
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.7e-09 63.5 47 61.7
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 7.7e-09 63.5 61 49.2
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.7e-09 63.5 61 49.2
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.7e-09 63.5 61 49.2
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.0e-08 63.2 52 55.8
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.0e-08 63.2 61 47.5
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.0e-08 63.2 61 47.5
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 1.0e-08 63.2 63 46.0
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.3e-08 62.8 58 56.9
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.3e-08 62.8 58 56.9
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.2e-08 62.0 43 65.1
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 2.2e-08 62.0 45 64.4
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.2e-08 62.0 58 56.9
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 2.9e-08 61.6 63 46.0
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 2.9e-08 61.6 43 67.4
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.8e-08 61.2 43 62.8
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 3.8e-08 61.2 43 62.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 3.8e-08 61.2 43 62.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.8e-08 61.2 43 62.8
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 3.8e-08 61.2 43 62.8
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 3.8e-08 61.2 43 65.1
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 5.0e-08 60.8 43 62.8
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 5.0e-08 60.8 43 62.8
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 5.0e-08 60.8 43 62.8
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 5.0e-08 60.8 63 44.4
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 6.5e-08 60.5 43 62.8
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.5e-08 60.5 61 47.5
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 8.5e-08 60.1 45 62.2
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 8.5e-08 60.1 63 46.0
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 8.5e-08 60.1 63 46.0
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-07 59.7 61 45.9
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.5e-07 59.3 45 57.8
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.9e-07 58.9 63 41.3
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.5e-07 58.5 48 54.2
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 2.5e-07 58.5 61 45.9
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.2e-07 58.2 43 60.5
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.2e-07 58.2 45 57.8
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 4.2e-07 57.8 43 62.8
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 4.2e-07 57.8 58 50.0
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 5.5e-07 57.4 45 57.8
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 5.5e-07 57.4 66 43.9
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 5.5e-07 57.4 66 42.4
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 5.5e-07 57.4 63 41.3
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.2e-06 56.2 66 40.9
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.6e-06 55.8 45 57.8
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.6e-06 55.8 66 42.4
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 3.6e-06 54.7 63 41.3
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 3.6e-06 54.7 40 67.5
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 3.6e-06 54.7 42 64.3
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.6e-06 54.7 42 59.5
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 6.1e-06 53.9 45 55.6
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 6.1e-06 53.9 43 55.8
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 8.0e-06 53.5 42 64.3


User provided reference genes

Program Settings