Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.6e-103 378.3 190 100.0
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.5e-82 308.5 169 91.1
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.5e-24 117.1 193 42.5
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.5e-24 116.3 168 44.6
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.5e-24 116.3 169 43.2
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.5e-24 116.3 189 43.4
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 4.3e-24 115.5 178 42.7
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 9.7e-24 114.4 160 45.6
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.7e-23 112.5 165 43.6
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.7e-23 112.5 165 43.6
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.7e-23 112.5 174 43.1
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.8e-23 112.1 170 45.9
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-22 110.9 173 41.0
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-22 110.5 165 43.0
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 3.1e-22 109.4 179 43.6
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 4.1e-22 109.0 172 41.3
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 4.1e-22 109.0 172 43.6
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.1e-22 109.0 177 40.1
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.0e-21 106.7 175 40.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.0e-21 106.7 175 42.3
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.0e-21 106.7 175 44.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.6e-21 106.3 171 43.9
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.5e-21 105.5 194 36.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.7e-21 104.8 170 41.2
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.7e-21 104.8 175 40.6
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 7.7e-21 104.8 162 40.7
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-20 104.4 170 41.2
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.0e-20 104.4 170 41.2
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.3e-20 104.0 164 42.7
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.2e-20 103.2 168 37.5
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.8e-20 102.4 168 39.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 5.0e-20 102.1 163 40.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 5.0e-20 102.1 163 40.5
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.0e-20 102.1 164 40.9
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 5.0e-20 102.1 172 37.8
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 6.5e-20 101.7 167 40.7
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 8.5e-20 101.3 172 37.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.1e-19 100.9 167 40.7
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-19 100.9 163 40.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.1e-19 100.9 178 39.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-19 100.9 167 40.7
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 40.5
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 40.5
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 40.5
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 40.5
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 40.5
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 40.5
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-19 100.1 163 40.5
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.9e-19 100.1 169 37.9
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.5e-19 99.8 168 37.5
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-19 99.8 163 40.5
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.2e-19 99.4 163 39.9
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 4.2e-19 99.0 182 38.5
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 5.5e-19 98.6 170 40.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 5.5e-19 98.6 162 38.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.2e-19 98.2 179 39.1
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 7.2e-19 98.2 173 37.6
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.2e-19 98.2 181 39.8
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 9.4e-19 97.8 173 37.6
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 9.4e-19 97.8 171 40.4
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-18 97.4 161 39.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-18 97.4 161 39.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.2e-18 97.4 161 39.8
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.2e-18 97.4 175 39.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.6e-18 97.1 166 36.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.7e-18 96.3 187 35.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.6e-18 95.9 168 39.3
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 6.1e-18 95.1 189 35.4
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 6.1e-18 95.1 182 39.6
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.9e-18 94.7 167 38.3
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 7.9e-18 94.7 197 34.5
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-17 94.0 167 38.9
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.4e-17 94.0 148 39.2
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.8e-17 93.6 167 37.7
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.8e-17 93.6 167 38.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.8e-17 93.6 185 36.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.8e-17 93.6 171 39.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-17 93.2 161 39.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-17 93.2 161 39.1
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.3e-17 93.2 174 39.7
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.3e-17 93.2 174 37.4
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 3.0e-17 92.8 167 38.9
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 3.9e-17 92.4 177 39.5
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.7e-17 91.7 177 37.9
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 8.8e-17 91.3 174 37.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.1e-16 90.9 198 35.4
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.1e-16 90.9 174 38.5
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.5e-16 90.5 181 35.9
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.0e-16 90.1 204 36.3
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.5e-16 89.7 187 34.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 2.5e-16 89.7 188 36.7
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.3e-16 89.4 165 35.8
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 4.3e-16 89.0 183 36.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 7.4e-16 88.2 174 37.4
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 7.4e-16 88.2 202 33.7
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 9.7e-16 87.8 151 36.4
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 9.7e-16 87.8 179 35.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 9.7e-16 87.8 144 37.5
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.3e-15 87.4 189 34.9
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.3e-15 87.4 161 36.6
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.2e-15 86.7 176 38.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.2e-15 86.7 164 35.4
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.8e-15 86.3 177 32.2
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-15 85.9 145 37.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 4.8e-15 85.5 178 36.5
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 6.3e-15 85.1 116 41.4
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 8.2e-15 84.7 182 35.7
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-14 84.3 180 36.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.1e-14 84.3 160 35.6
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.4e-14 83.2 186 34.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.4e-14 83.2 186 34.9
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.1e-14 82.8 180 35.6
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 5.3e-14 82.0 178 36.5
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 6.9e-14 81.6 178 33.7
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.2e-13 80.9 172 33.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.6e-13 79.7 163 36.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.6e-13 79.7 156 35.9
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.5e-13 79.0 169 36.1
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 5.9e-13 78.6 163 38.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 7.7e-13 78.2 156 34.6
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.3e-12 77.4 162 34.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.7e-12 77.0 215 29.3
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.7e-12 77.0 165 33.9
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.9e-12 76.3 168 35.1
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.8e-12 75.9 203 32.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.5e-11 73.2 166 33.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.2e-11 72.8 165 34.5
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 5.5e-11 72.0 124 38.7
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.5e-11 72.0 165 34.5
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.2e-11 71.6 171 32.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 7.2e-11 71.6 170 32.9
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.2e-10 70.9 129 39.5
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.2e-10 70.9 154 33.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.2e-10 70.9 179 31.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 6.1e-10 68.6 158 35.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 6.1e-10 68.6 161 32.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 6.1e-10 68.6 166 35.5
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 7.9e-10 68.2 171 33.3
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.0e-09 67.8 160 33.1
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.0e-09 67.8 186 32.3
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-09 67.0 163 33.1
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.8e-09 67.0 163 33.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.8e-09 67.0 163 30.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.9e-09 65.9 153 35.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.9e-09 65.9 196 30.6
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 6.7e-09 65.1 190 31.1
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.8e-09 64.7 127 37.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 8.8e-09 64.7 94 40.4
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.5e-08 63.9 197 29.9
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.5e-08 63.9 197 29.9
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-08 63.9 167 32.9
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.0e-08 63.5 197 29.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.6e-08 63.2 226 28.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.3e-07 60.8 94 37.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.7e-07 60.5 188 31.9
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.7e-07 60.5 133 33.1
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.2e-07 60.1 175 31.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.7e-07 59.3 129 37.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 4.8e-07 58.9 168 31.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 8.2e-07 58.2 233 30.0
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-06 57.8 135 33.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.4e-06 57.4 183 27.3
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.1e-06 56.2 155 31.0


User provided reference genes

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