Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.3e-137 493.0 254 100.0
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 3.7e-79 298.9 171 87.7
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.7e-36 157.1 170 49.4
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 3.6e-34 149.4 180 47.2
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 3.1e-33 146.4 171 48.5
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.2e-33 145.6 173 46.8
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 8.9e-33 144.8 172 45.9
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.5e-32 144.1 179 46.9
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 3.4e-32 142.9 175 46.3
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 4.4e-32 142.5 174 47.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.8e-32 142.1 180 45.0
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.3e-31 141.0 175 47.4
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.3e-31 141.0 172 46.5
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 6.4e-31 138.7 176 47.2
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.4e-31 138.7 177 45.2
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 6.4e-31 138.7 177 45.2
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-30 137.5 177 47.5
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-30 137.5 177 47.5
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.9e-30 137.1 175 46.3
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.9e-30 137.1 175 45.1
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.9e-30 137.1 177 47.5
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.2e-30 136.3 177 45.2
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.1e-30 136.0 171 45.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 5.4e-30 135.6 178 43.8
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 9.2e-30 134.8 173 45.7
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 9.2e-30 134.8 173 45.7
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 9.2e-30 134.8 173 45.7
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 2.1e-29 133.7 172 43.6
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 3.5e-29 132.9 175 44.6
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.5e-29 132.9 171 43.3
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 7.8e-29 131.7 227 39.2
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.3e-28 131.0 177 45.8
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.3e-28 131.0 177 45.8
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.7e-28 130.6 176 44.3
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.7e-28 130.6 171 42.1
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 3.0e-28 129.8 176 43.2
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 3.9e-28 129.4 180 45.0
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 5.1e-28 129.0 172 43.0
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 6.6e-28 128.6 178 44.9
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 6.6e-28 128.6 173 44.5
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 6.6e-28 128.6 170 46.5
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 6.6e-28 128.6 174 44.8
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 6.6e-28 128.6 155 47.1
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 8.6e-28 128.3 140 48.6
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.5e-27 127.5 176 46.0
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.5e-27 127.5 178 43.8
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 1.9e-27 127.1 171 43.3
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.9e-27 127.1 176 43.8
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 3.3e-27 126.3 173 43.4
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 4.3e-27 125.9 170 42.4
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 4.3e-27 125.9 181 43.1
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 4.3e-27 125.9 170 44.1
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 7.3e-27 125.2 172 42.4
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 7.3e-27 125.2 178 43.8
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 9.6e-27 124.8 170 44.7
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.2e-26 124.4 176 42.6
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.2e-26 124.4 188 42.0
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.1e-26 123.6 178 42.7
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.1e-26 123.6 181 42.0
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 2.1e-26 123.6 185 42.7
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.8e-26 123.2 170 42.4
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.8e-26 123.2 173 45.7
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 4.7e-26 122.5 171 44.4
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 4.7e-26 122.5 174 45.4
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 4.7e-26 122.5 184 40.8
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 6.2e-26 122.1 177 41.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 6.2e-26 122.1 173 43.9
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 8.1e-26 121.7 174 44.8
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 1.4e-25 120.9 176 42.0
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.8e-25 120.6 179 41.3
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.8e-25 120.6 172 41.9
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.8e-25 120.6 184 42.4
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 4.0e-25 119.4 172 41.3
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.5e-24 117.5 177 40.7
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.5e-24 117.5 178 42.7
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 4.4e-24 115.9 177 41.2
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 9.9e-24 114.8 185 41.1
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.3e-23 114.4 180 42.8
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.3e-23 114.4 181 41.4
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.7e-23 114.0 184 40.8
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.7e-23 114.0 176 43.8
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 3.8e-23 112.8 170 41.8
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.8e-23 112.8 186 40.9
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 4.9e-23 112.5 148 46.6
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 6.4e-23 112.1 138 49.3
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.9e-22 110.5 167 43.1
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.9e-22 110.5 182 40.7
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 2.4e-22 110.2 180 39.4
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.4e-22 110.2 167 43.1
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 4.2e-22 109.4 184 40.2
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 5.4e-22 109.0 182 35.7
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 7.1e-22 108.6 180 40.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 7.1e-22 108.6 164 43.3
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 7.1e-22 108.6 174 44.3
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 1.2e-21 107.8 171 43.3
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.1e-21 107.1 194 38.7
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.7e-21 106.7 174 40.8
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 3.5e-21 106.3 180 40.6
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 3.5e-21 106.3 170 42.9
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.0e-21 105.5 167 41.9
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.0e-21 105.5 167 41.9
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 7.8e-21 105.1 136 40.4
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 7.8e-21 105.1 172 37.8
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.3e-20 104.4 167 40.7
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 2.3e-20 103.6 182 37.4
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 2.3e-20 103.6 189 40.2
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 3.0e-20 103.2 183 39.3
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.9e-20 102.8 167 41.3
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 3.9e-20 102.8 175 42.9
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 5.1e-20 102.4 169 39.6
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 8.7e-20 101.7 182 39.0
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.1e-19 101.3 185 39.5
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 1.1e-19 101.3 181 39.2
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 1.1e-19 101.3 181 39.2
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 1.5e-19 100.9 174 40.2
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 1.9e-19 100.5 198 38.4
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.5e-19 100.1 180 40.6
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 3.3e-19 99.8 141 40.4
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.3e-19 99.8 173 38.7
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 3.3e-19 99.8 144 43.8
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 3.3e-19 99.8 168 41.1
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 3.3e-19 99.8 187 38.0
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 5.6e-19 99.0 173 38.2
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 1.6e-18 97.4 183 38.3
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.6e-18 97.4 187 34.8
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.6e-18 97.4 185 39.5
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 2.1e-18 97.1 171 36.3
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.1e-18 97.1 139 45.3
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 2.1e-18 97.1 182 40.7
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.8e-18 96.7 182 41.2
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 6.2e-18 95.5 139 41.7
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 6.2e-18 95.5 169 37.9
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 8.1e-18 95.1 177 39.0
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 8.1e-18 95.1 139 43.9
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.1e-17 94.7 152 43.4
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 1.4e-17 94.4 204 33.3
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.8e-17 94.0 233 31.8
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 3.1e-17 93.2 121 44.6
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.3e-17 92.4 133 46.6
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 5.3e-17 92.4 142 40.1
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.9e-17 92.0 152 41.4
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 9.0e-17 91.7 176 36.9
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 2.0e-16 90.5 200 35.5
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 2.6e-16 90.1 140 38.6
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 4.5e-16 89.4 188 34.0
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 2.9e-15 86.7 180 35.0
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 2.9e-15 86.7 159 38.4
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 3.8e-15 86.3 154 37.0
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 6.4e-15 85.5 162 40.7
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 1.1e-14 84.7 154 39.0
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 1.1e-14 84.7 172 37.8
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 1.9e-14 84.0 196 36.7
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 2.4e-14 83.6 138 39.1
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 4.2e-14 82.8 156 42.3
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 5.4e-14 82.4 162 40.1
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 5.4e-14 82.4 171 33.3
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 1.6e-13 80.9 153 42.5
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 2.1e-13 80.5 139 38.8
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.1e-13 80.5 172 33.7
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.0e-13 79.0 165 35.8
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 6.0e-13 79.0 170 33.5
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 1.0e-12 78.2 171 37.4
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 3.0e-12 76.6 137 40.1
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 6.7e-12 75.5 167 37.1
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 8.7e-12 75.1 154 40.3
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.1e-11 74.7 80 48.8
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 1.5e-11 74.3 166 38.6
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 3.3e-11 73.2 191 36.6
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 4.3e-11 72.8 153 32.7
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 5.6e-11 72.4 187 37.4
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 5.6e-11 72.4 117 41.9
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.6e-10 70.9 135 34.8
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 1.6e-10 70.9 110 42.7
Atru.chr3.3891 Acer truncatum HOM05D003527 ORTHO05D004099 1.1e-09 68.2 59 54.2
Dinv35615 Davidia involucrata HOM05D003527 ORTHO05D004099 3.1e-09 66.6 51 62.7
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 3.1e-09 66.6 132 35.6
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 3.1e-09 66.6 128 33.6
Actinidia34400 Actinidia chinensis HOM05D003527 ORTHO05D004099 5.3e-09 65.9 68 52.9
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 9.9e-08 61.6 127 35.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 1.7e-07 60.8 166 28.9
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 2.2e-07 60.5 146 35.6
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 4.9e-07 59.3 114 33.3
RcHm_v2.0_Chr2g0141581 Rosa chinensis HOM05D003527 ORTHO05D004099 6.4e-07 58.9 52 57.7
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 7.1e-06 55.5 68 47.1
MD04G1127100 Malus domestica HOM05D003527 ORTHO05D004099 7.1e-06 55.5 56 55.4


User provided reference genes

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