Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.7e-179 632.5 314 100.0
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.5e-127 458.8 290 83.8
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.5e-117 426.8 303 71.6
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 7.2e-117 424.5 310 70.3
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 9.4e-117 424.1 310 69.0
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.1e-116 422.9 303 71.3
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.7e-116 422.5 316 69.3
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.1e-116 421.4 309 68.3
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.4e-115 420.2 310 68.7
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 4.0e-115 418.7 310 69.4
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 5.2e-115 418.3 292 70.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 6.8e-115 417.9 310 69.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 6.8e-115 417.9 303 70.0
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.2e-114 417.2 310 68.1
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.5e-114 416.8 308 68.5
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 3.4e-114 415.6 310 68.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 3.4e-114 415.6 314 67.5
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.4e-114 415.2 315 67.6
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.4e-114 415.2 292 70.5
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.4e-114 415.2 292 70.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 6.3e-113 411.4 315 65.7
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 8.3e-113 411.0 310 68.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.4e-112 410.2 302 68.9
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.4e-112 410.2 299 69.2
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.4e-112 410.2 307 68.1
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.4e-112 410.2 302 67.9
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.4e-112 409.5 310 67.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.4e-112 409.5 309 66.7
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.4e-112 409.5 298 68.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.1e-112 409.1 308 67.2
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 3.1e-112 409.1 316 65.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 5.4e-112 408.3 300 69.0
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 5.4e-112 408.3 297 68.4
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 7.0e-112 407.9 310 66.5
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.6e-111 406.8 307 65.8
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.0e-111 406.4 299 68.2
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 3.8e-110 402.1 293 67.6
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 3.8e-110 402.1 299 67.9
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 3.8e-110 402.1 306 67.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.0e-110 401.7 316 65.8
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 6.5e-110 401.4 300 68.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 6.5e-110 401.4 307 64.5
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 6.5e-110 401.4 313 64.5
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 8.5e-110 401.0 291 67.7
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.1e-109 400.6 313 65.2
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.5e-109 400.2 306 64.4
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.5e-109 400.2 306 64.4
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.9e-109 399.8 309 64.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.5e-109 399.4 309 64.7
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.2e-109 399.1 316 65.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 3.2e-109 399.1 315 65.4
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 3.2e-109 399.1 308 66.2
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 4.2e-109 398.7 315 65.4
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 4.2e-109 398.7 306 64.1
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.2e-109 398.7 314 64.6
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 4.2e-109 398.7 314 64.6
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 5.5e-109 398.3 310 66.1
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 9.4e-109 397.5 318 67.3
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 9.4e-109 397.5 309 64.1
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 9.4e-109 397.5 300 67.3
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.2e-108 397.1 299 66.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.6e-108 396.7 314 64.3
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.1e-108 396.4 355 61.1
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 6.1e-108 394.8 306 66.0
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 8.0e-108 394.4 302 66.9
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.4e-107 393.7 300 67.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.8e-107 393.3 309 65.4
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.3e-107 392.9 305 64.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 4.0e-107 392.1 315 64.1
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 5.2e-107 391.7 294 67.3
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.2e-106 390.6 296 68.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-106 390.2 311 63.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.7e-106 388.3 339 59.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 7.5e-106 387.9 309 63.8
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.7e-105 386.7 307 63.2
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-105 386.7 307 63.2
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.2e-105 386.3 303 66.0
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.2e-105 386.3 303 66.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 3.7e-105 385.6 314 64.3
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-104 384.0 324 60.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.4e-104 381.7 353 57.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 3.5e-103 379.0 314 63.1
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 4.5e-103 378.6 300 64.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 5.9e-103 378.3 278 66.9
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 7.7e-103 377.9 310 64.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 7.7e-103 377.9 359 56.3
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.0e-102 377.5 316 63.0
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.0e-102 377.5 375 57.9
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.7e-102 376.7 300 63.3
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.9e-102 375.9 294 63.9
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.8e-102 375.6 324 59.9
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 8.0e-100 367.9 302 64.2
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.0e-98 363.2 316 61.4
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.0e-98 363.2 303 60.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.2e-95 354.0 309 59.5
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.7e-95 352.8 337 57.3
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.3e-94 349.7 304 61.5
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 8.6e-94 347.8 313 59.7
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.6e-92 342.4 304 56.6
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.0e-91 340.9 316 57.9
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 5.8e-90 335.1 294 59.2
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.7e-87 326.2 297 55.9
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 6.4e-81 305.1 227 67.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.1e-80 302.4 310 52.6
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 4.1e-80 302.4 229 68.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 5.4e-80 302.0 222 66.7
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 6.0e-79 298.5 224 67.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.1e-75 287.7 229 63.3
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.0e-70 271.2 302 49.7
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.2e-68 264.2 224 59.4
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.0e-63 245.4 236 54.7
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.3e-57 227.6 144 77.1
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.6e-55 220.7 215 57.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.3e-49 201.1 265 43.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 4.9e-49 199.1 107 85.0
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.4e-48 197.6 107 83.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 5.5e-48 195.7 139 68.3
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 9.3e-48 194.9 318 37.7
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 3.3e-45 186.4 101 86.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.2e-41 173.7 330 39.1
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.5e-37 160.2 126 60.3
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 7.4e-37 158.7 126 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.1e-36 157.1 135 54.8
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 5.3e-35 152.5 121 58.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-34 151.0 132 56.1
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.6e-34 148.7 119 58.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.6e-34 148.7 119 58.8
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.3e-33 147.9 99 72.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 8.5e-33 145.2 119 57.1
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.5e-24 117.1 182 42.9
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 2.7e-23 113.6 94 58.5
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-21 107.1 162 40.7
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 9.1e-19 98.6 78 60.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-18 98.2 69 71.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.7e-17 94.4 63 65.1
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 8.5e-17 92.0 66 60.6
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.2e-16 89.7 87 50.6
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.2e-15 88.2 60 68.3
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 2.1e-15 87.4 63 71.4
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 9.7e-13 78.6 53 71.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.7e-12 77.8 146 37.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.0e-09 68.6 49 61.2
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.0e-09 68.6 52 61.5
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.9e-08 64.3 51 51.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 7.2e-08 62.4 50 54.0
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 3.6e-07 60.1 54 57.4


User provided reference genes

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