Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 0.0e+00 1493.0 757 100.0
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.4e-72 277.3 820 29.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.8e-71 273.9 824 30.9
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 3.2e-70 270.8 762 30.3
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 7.2e-70 269.6 826 29.8
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 5.1e-68 263.5 756 31.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 5.3e-65 253.4 861 28.9
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 3.4e-64 250.8 718 30.4
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.7e-63 248.4 764 29.3
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 5.1e-60 236.9 836 28.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.1e-59 235.7 776 29.9
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 9.7e-59 232.6 826 27.6
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.7e-58 230.7 771 29.2
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.4e-57 228.8 779 28.8
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 9.1e-57 226.1 792 28.7
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.2e-56 225.7 768 28.4
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.0e-56 224.9 813 28.7
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 5.9e-56 223.4 764 28.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.0e-55 222.6 835 26.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.3e-55 222.2 823 26.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.7e-55 221.9 770 28.3
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.2e-55 221.5 771 29.3
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.9e-55 221.1 795 29.1
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 6.5e-55 219.9 764 28.4
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.1e-54 219.2 851 26.8
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-54 219.2 784 29.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 7.2e-54 216.5 766 28.3
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 7.2e-54 216.5 765 27.2
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-53 215.7 775 28.8
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.6e-53 215.3 810 26.9
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.7e-53 214.5 758 27.8
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.4e-52 212.2 824 27.4
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.5e-51 208.8 757 29.7
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 7.4e-51 206.5 800 26.5
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.8e-50 204.5 753 27.1
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 8.2e-50 203.0 768 26.6
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 9.1e-49 199.5 764 28.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 9.1e-49 199.5 764 26.8
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.2e-48 199.1 832 25.2
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 4.5e-48 197.2 831 26.0
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.0e-47 196.1 759 26.6
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.8e-47 194.1 848 25.8
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.1e-46 192.6 761 26.4
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.5e-46 192.2 764 26.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 4.2e-46 190.7 263 39.9
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.7e-45 188.0 721 27.7
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 3.6e-45 187.6 829 26.9
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 6.1e-45 186.8 749 26.2
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 8.0e-45 186.4 807 23.9
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 6.8e-44 183.3 780 26.8
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 5.7e-43 180.3 756 25.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.7e-42 177.6 758 25.1
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.8e-42 177.2 770 25.8
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 6.3e-42 176.8 757 27.3
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 5.3e-41 173.7 820 23.8
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 9.1e-41 172.9 723 27.2
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.7e-40 171.4 832 25.7
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 4.5e-40 170.6 847 25.4
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 4.5e-40 170.6 753 24.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.9e-40 170.2 820 24.8
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 7.7e-40 169.9 774 25.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.0e-39 169.5 757 25.5
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 3.2e-38 164.5 757 24.4
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 5.5e-38 163.7 710 25.9
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.6e-37 161.0 795 25.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.0e-36 157.9 270 34.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 3.0e-36 157.9 782 25.4
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 3.7e-34 151.0 888 23.0
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.4e-33 149.1 764 25.8
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 4.1e-33 147.5 890 23.1
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 5.4e-33 147.1 819 25.3
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 5.4e-33 147.1 799 23.3
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.0e-33 146.7 303 33.3
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 7.0e-33 146.7 797 23.1
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 9.1e-33 146.4 429 30.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.0e-32 145.2 860 23.1
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 3.5e-32 144.4 156 47.4
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.5e-32 144.1 829 22.6
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 7.7e-32 143.3 753 25.1
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.0e-31 142.9 814 24.9
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.0e-31 142.9 757 24.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.0e-31 142.9 301 31.2
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.3e-31 141.7 804 22.8
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.3e-31 141.7 245 36.7
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.3e-31 141.7 782 24.9
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 8.6e-31 139.8 882 22.4
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.3e-30 137.9 334 29.3
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 9.5e-30 136.3 260 35.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-29 136.0 230 36.5
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.6e-29 135.6 887 22.1
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.6e-29 135.6 253 35.6
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.6e-29 135.6 273 33.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.1e-29 135.2 762 24.9
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.6e-29 134.4 264 32.6
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 4.7e-29 134.0 150 44.0
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 6.1e-29 133.7 626 25.2
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 8.0e-29 133.3 807 21.9
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.0e-29 133.3 264 34.8
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.0e-28 132.9 264 33.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.4e-28 132.5 249 34.1
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.2e-28 130.6 177 42.4
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 8.9e-28 129.8 129 48.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.2e-27 129.4 251 35.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-27 129.0 269 31.6
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.6e-27 128.3 150 44.0
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 4.4e-27 127.5 293 30.4
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 4.4e-27 127.5 177 44.6
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.4e-27 127.5 270 31.1
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-26 125.9 280 31.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.2e-26 125.2 147 44.2
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.3e-26 123.2 147 44.2
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.8e-25 122.1 637 24.8
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.2e-25 121.3 209 37.3
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 4.1e-25 120.9 315 30.8
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.0e-25 120.2 281 30.6
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.7e-24 118.2 282 32.3
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.7e-24 118.2 263 30.8
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.0e-23 116.3 171 37.4
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.3e-23 115.9 315 29.8
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.6e-23 113.2 136 48.5
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.5e-22 111.7 260 31.9
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 4.3e-22 110.9 134 44.0
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.7e-21 107.5 126 50.0
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 4.7e-21 107.5 131 44.3
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.0e-20 106.3 134 45.5
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.8e-20 105.5 752 20.9
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.9e-20 103.2 140 42.1
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.9e-20 103.2 131 47.3
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 2.0e-19 102.1 141 40.4
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.4e-19 101.3 159 39.6
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.9e-18 97.4 332 25.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 8.3e-18 96.7 174 32.8
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 8.3e-18 96.7 175 36.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 1.9e-17 95.5 143 39.2
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.2e-17 94.7 219 30.1
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 1.2e-16 92.8 174 32.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.2e-16 92.8 179 31.3
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.0e-16 92.0 182 30.8
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.3e-15 89.4 176 31.8
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.9e-14 85.5 202 29.2
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.9e-14 85.5 105 42.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-13 82.8 103 41.7
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-13 82.8 103 41.7
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 2.3e-12 78.6 158 31.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 4.0e-12 77.8 103 40.8
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 4.4e-11 74.3 130 31.5
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 9.8e-11 73.2 128 34.4
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 3.7e-10 71.2 181 32.6
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.2e-08 66.2 129 34.9
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 4.6e-08 64.3 77 45.5
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.7e-07 62.4 193 29.5


User provided reference genes

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