Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 3.2e-113 411.8 205 100.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.9e-40 167.9 174 50.0
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 5.7e-38 161.8 211 44.1
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 7.4e-38 161.4 211 44.1
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 7.4e-38 161.4 220 40.9
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 9.7e-38 161.0 199 47.7
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 6.3e-37 158.3 200 47.5
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 8.2e-37 157.9 162 49.4
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 8.2e-37 157.9 145 56.6
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 3.1e-36 156.0 193 44.0
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 9.1e-36 154.5 162 48.1
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.2e-35 154.1 162 48.1
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.2e-35 154.1 198 43.4
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.6e-35 152.9 199 45.7
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 4.5e-35 152.1 199 43.7
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 7.7e-35 151.4 127 59.8
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 7.7e-35 151.4 203 43.3
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.0e-34 151.0 131 55.7
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.3e-34 150.6 156 53.2
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.7e-34 150.2 149 52.3
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.2e-34 149.8 199 42.7
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.8e-34 149.1 187 45.5
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 5.0e-34 148.7 207 41.5
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 6.5e-34 148.3 160 48.8
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 8.5e-34 147.9 163 50.3
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.5e-33 147.1 205 43.4
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.9e-33 146.7 173 47.4
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.9e-33 146.7 194 46.4
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 2.5e-33 146.4 203 39.9
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.5e-33 146.4 121 57.0
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 3.2e-33 146.0 177 49.7
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 3.2e-33 146.0 184 46.2
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 3.2e-33 146.0 144 54.2
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 5.5e-33 145.2 203 39.9
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 5.5e-33 145.2 120 59.2
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 7.2e-33 144.8 121 57.9
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 1.6e-32 143.7 94 77.7
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 3.6e-32 142.5 167 49.1
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 3.6e-32 142.5 205 42.0
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.7e-32 142.1 200 43.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 6.1e-32 141.7 160 48.1
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 6.1e-32 141.7 199 42.2
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.1e-32 141.7 121 57.0
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 6.1e-32 141.7 120 58.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 8.0e-32 141.4 165 44.8
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.8e-31 140.2 155 49.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.8e-31 140.2 120 58.3
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 3.0e-31 139.4 120 59.2
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 4.0e-31 139.0 131 52.7
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.2e-31 138.7 180 43.9
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 6.7e-31 138.3 145 50.3
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 8.8e-31 137.9 176 46.6
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.0e-30 136.7 161 48.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.6e-30 136.3 154 48.1
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 3.3e-30 136.0 138 49.3
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 3.3e-30 136.0 214 40.2
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.3e-30 136.0 160 45.6
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 4.4e-30 135.6 171 40.4
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 4.4e-30 135.6 155 46.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 4.4e-30 135.6 172 45.3
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 9.7e-30 134.4 150 49.3
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.3e-29 134.0 129 53.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.3e-29 134.0 127 53.5
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.3e-29 134.0 130 51.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.7e-29 133.7 195 43.6
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 2.2e-29 133.3 142 50.0
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 2.2e-29 133.3 197 40.1
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 2.2e-29 133.3 202 39.6
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.8e-29 132.9 108 59.3
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.8e-29 132.9 115 57.4
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.8e-29 132.1 108 58.3
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.8e-29 132.1 108 58.3
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 4.8e-29 132.1 150 48.0
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 6.3e-29 131.7 211 40.3
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 6.3e-29 131.7 154 48.7
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 6.3e-29 131.7 157 46.5
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 6.3e-29 131.7 164 47.0
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.4e-28 130.6 176 44.3
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.8e-28 130.2 123 52.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.8e-28 130.2 205 37.6
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.8e-28 130.2 173 42.8
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.8e-28 130.2 119 52.9
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.1e-28 129.4 169 40.8
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.1e-28 129.4 171 39.8
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 5.3e-28 128.6 137 49.6
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.3e-28 128.6 119 52.9
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.0e-28 128.3 120 51.7
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 9.1e-28 127.9 141 48.9
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 9.1e-28 127.9 190 38.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.6e-27 127.1 150 46.7
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 3.5e-27 125.9 165 42.4
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.7e-26 123.6 146 45.2
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 2.2e-26 123.2 208 42.3
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.9e-26 122.9 117 50.4
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.0e-26 122.1 130 47.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 6.5e-26 121.7 168 42.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 8.5e-26 121.3 84 67.9
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.1e-25 120.9 167 39.5
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.5e-25 120.6 202 38.6
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.5e-25 120.6 84 67.9
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.9e-25 120.2 153 41.8
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.9e-25 120.2 130 44.6
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 4.2e-25 119.0 170 38.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 4.2e-25 119.0 158 41.8
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 7.2e-25 118.2 121 52.9
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.1e-24 116.7 176 38.1
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 2.1e-24 116.7 169 39.6
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.6e-24 115.9 155 40.6
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.1e-24 115.2 173 37.6
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.0e-23 114.4 172 37.8
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.0e-23 114.4 162 44.4
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.8e-23 113.6 121 43.0
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 3.0e-23 112.8 158 43.7
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.0e-23 112.8 110 48.2
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 6.8e-23 111.7 122 45.9
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 2.0e-22 110.2 144 37.5
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-22 110.2 181 37.0
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 4.4e-22 109.0 161 36.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 4.4e-22 109.0 132 47.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 5.7e-22 108.6 125 38.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 9.8e-22 107.8 161 36.0
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 9.8e-22 107.8 189 36.0
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 9.8e-22 107.8 140 45.7
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-21 107.5 129 48.8
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 1.3e-21 107.5 107 48.6
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 2.8e-21 106.3 126 42.9
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.7e-21 105.9 170 35.9
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 4.8e-21 105.5 228 33.8
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 8.3e-21 104.8 109 47.7
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.4e-20 103.2 153 41.2
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.4e-20 103.2 126 46.8
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 3.1e-20 102.8 128 42.2
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 4.1e-20 102.4 111 50.5
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 7.0e-20 101.7 83 59.0
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 7.0e-20 101.7 116 44.0
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 9.1e-20 101.3 136 40.4
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 3.5e-19 99.4 153 37.3
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 5.9e-19 98.6 153 36.6
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 2.3e-18 96.7 177 33.9
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 5.5e-17 92.0 181 33.1
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 4.7e-16 89.0 77 51.9
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.4e-15 87.4 77 51.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.0e-15 85.9 117 39.3
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.5e-14 84.0 99 48.5
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.6e-14 83.2 77 50.6
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 3.4e-14 82.8 172 33.1
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.2e-13 80.1 174 32.2
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-13 79.7 89 46.1
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.8e-12 77.0 119 37.0
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 7.0e-12 75.1 62 62.9
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 7.0e-12 75.1 115 38.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.6e-11 73.9 86 45.3
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.5e-11 72.4 139 33.1
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 5.0e-10 68.9 137 31.4
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 4.3e-09 65.9 77 44.2
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.0e-08 61.6 81 46.9
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.4e-07 60.8 108 30.6
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.4e-07 60.8 39 66.7
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 4.4e-06 55.8 91 35.2


User provided reference genes

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