Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1543 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 9.1e-148 527.3 361 100.0
CDE06G1282 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 6.8e-127 458.0 348 75.3
TAR628G1727 Trochodendron aralioides HOM05D004912 ORTHO05D006144 1.2e-51 208.0 384 42.7
Nn5g27542 Nelumbo nucifera HOM05D004912 ORTHO05D006144 3.3e-41 173.3 437 41.6
ATR1134G033 Amborella trichopoda HOM05D004912 ORTHO05D006144 1.0e-37 161.8 390 41.8
MBI17_g01791_MAGBIO Magnolia biondii HOM05D004912 ORTHO05D006144 5.2e-34 149.4 422 41.5
Dinv41750 Davidia involucrata HOM05D004912 ORTHO05D006144 9.7e-33 145.2 378 38.6
Eucgr.F04115 Eucalyptus grandis HOM05D004912 ORTHO05D006144 1.4e-31 141.4 380 45.0
QL02p026125 Quercus lobata HOM05D004912 ORTHO05D006144 9.1e-31 138.7 385 40.3
COL.COLO4_05030 Corchorus olitorius HOM05D004912 ORTHO05D006144 1.6e-30 137.9 347 39.2
arahy.Tifrunner.gnm1.ann1.NID8M3 Arachis hypogaea HOM05D004912 ORTHO05D006144 2.0e-30 137.5 347 33.4
Peaxi162Scf00154g00016 Petunia axillaris HOM05D004912 ORTHO05D006144 2.0e-30 137.5 350 44.3
arahy.Tifrunner.gnm1.ann1.9DDU7S Arachis hypogaea HOM05D004912 ORTHO05D006144 3.5e-30 136.7 347 32.9
EL10Ac1g00125 Beta vulgaris HOM05D004912 ORTHO05D006144 1.3e-29 134.8 352 32.7
Lj3g0019671 Lotus japonicus HOM05D004912 ORTHO05D006144 5.5e-28 129.4 350 38.0
arahy.Tifrunner.gnm1.ann1.Z6QD6J Arachis hypogaea HOM05D004912 ORTHO05D006144 1.6e-27 127.9 347 35.2
CiPaw.08G002400 Carya illinoinensis HOM05D004912 ORTHO05D006144 1.6e-27 127.9 384 33.1
HanXRQChr09g0260131 Helianthus annuus HOM05D004912 ORTHO05D006144 1.6e-27 127.9 370 31.4
Nitab4.5_0001378g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 3.6e-27 126.7 364 47.8
Cfa012942 Carpinus fangiana HOM05D004912 ORTHO05D006144 1.0e-26 125.2 396 37.1
CANSAT25G2909 Cannabis sativa HOM05D004912 ORTHO05D006144 3.0e-26 123.6 367 35.1
SalBow7G4664 Salvia bowleyana HOM05D004912 ORTHO05D006144 1.5e-25 121.3 356 48.3
Ah.05g178460 Amaranthus hybridus HOM05D004912 ORTHO05D006144 2.6e-25 120.6 360 36.9
arahy.Tifrunner.gnm1.ann1.SX2JAI Arachis hypogaea HOM05D004912 ORTHO05D006144 2.6e-25 120.6 347 30.8
Nitab4.5_0007332g0020 Nicotiana tabacum HOM05D004912 ORTHO05D006144 4.4e-25 119.8 366 47.8
Prupe.1G554000 Prunus persica HOM05D004912 ORTHO05D006144 4.4e-25 119.8 398 44.0
VMungo1127G0246 Vigna mungo HOM05D004912 ORTHO05D006144 4.4e-25 119.8 347 40.3
Ca_27514_v3 Cicer arietinum L. HOM05D004912 ORTHO05D006144 7.5e-25 119.0 351 35.6
Manes.18G104400 Manihot esculenta HOM05D004912 ORTHO05D006144 9.7e-25 118.6 372 38.2
Nitab4.5_0006163g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 9.7e-25 118.6 375 35.7
Sc01g0001930 Simmondsia chinensis HOM05D004912 ORTHO05D006144 9.7e-25 118.6 364 34.3
AUR62004613 Chenopodium quinoa HOM05D004912 ORTHO05D006144 2.8e-24 117.1 363 35.5
Rhsim11G0053200 Rhododendron simsii HOM05D004912 ORTHO05D006144 3.7e-24 116.7 129 47.3
Atru.chr13.2352 Acer truncatum HOM05D004912 ORTHO05D006144 6.3e-24 115.9 364 42.6
Migut.C01310 Erythranthe guttata HOM05D004912 ORTHO05D006144 8.2e-24 115.5 127 46.5
Glyma.08G239400 Glycine max HOM05D004912 ORTHO05D006144 1.4e-23 114.8 361 34.1
Medtr4g033230 Medicago truncatula HOM05D004912 ORTHO05D006144 1.4e-23 114.8 366 37.7
Medtr4g033265 Medicago truncatula HOM05D004912 ORTHO05D006144 1.4e-23 114.8 366 37.7
GSVIVG01001769001 Vitis vinifera HOM05D004912 ORTHO05D006144 1.4e-23 114.8 350 32.3
AUR62022650 Chenopodium quinoa HOM05D004912 ORTHO05D006144 1.8e-23 114.4 385 37.9
Aa31LG4G8550 Aethionema arabicum HOM05D004912 ORTHO05D006144 5.3e-23 112.8 352 40.9
Nitab4.5_0005750g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 5.3e-23 112.8 387 39.5
Cc10_g10040 Coffea canephora HOM05D004912 ORTHO05D006144 1.2e-22 111.7 361 39.3
Gohir.D05G275200 Gossypium hirsutum HOM05D004912 ORTHO05D006144 2.7e-22 110.5 356 26.1
Sopen06g023560 Solanum pennellii HOM05D004912 ORTHO05D006144 5.9e-22 109.4 361 34.9
Oeu051787.1 Olea europaea HOM05D004912 ORTHO05D006144 7.7e-22 109.0 348 33.6
Sabra13G0093000 Salix brachista HOM05D004912 ORTHO05D006144 1.0e-21 108.6 385 44.2
PGSC0003DMG400031323 Solanum tuberosum HOM05D004912 ORTHO05D006144 1.0e-21 108.6 351 34.2
Gohir.D13G123600 Gossypium hirsutum HOM05D004912 ORTHO05D006144 1.7e-21 107.8 108 51.9
Gorai.013G138700 Gossypium raimondii HOM05D004912 ORTHO05D006144 1.7e-21 107.8 108 51.9
HPP92_005696 Vanilla planifolia HOM05D004912 ORTHO05D006144 1.7e-21 107.8 351 39.0
CAN.G308.42 Capsicum annuum HOM05D004912 ORTHO05D006144 2.9e-21 107.1 354 44.9
Lsat_1_v5_gn_7_21041 Lactuca sativa HOM05D004912 ORTHO05D006144 2.9e-21 107.1 407 26.8
ECA232G1825 Erigeron canadensis HOM05D004912 ORTHO05D006144 3.8e-21 106.7 126 43.7
Rhsim12G0007100 Rhododendron simsii HOM05D004912 ORTHO05D006144 1.1e-20 105.1 352 40.1
Sp5g27160 Schrenkiella parvula HOM05D004912 ORTHO05D006144 1.5e-20 104.8 386 43.8
Phvul.011G001700 Phaseolus vulgaris HOM05D004912 ORTHO05D006144 1.9e-20 104.4 347 41.5
TPR.G312 Trifolium pratense HOM05D004912 ORTHO05D006144 1.9e-20 104.4 352 36.6
ClCG11G008550 Citrullus lanatus HOM05D004912 ORTHO05D006144 2.5e-20 104.0 350 30.6
GSVIVG01001772001 Vitis vinifera HOM05D004912 ORTHO05D006144 2.5e-20 104.0 125 44.0
Aqoxy6G00063 Aquilegia oxysepala HOM05D004912 ORTHO05D006144 3.2e-20 103.6 127 44.1
Zm00001eb422690 Zea mays HOM05D004912 ORTHO05D006144 5.5e-20 102.8 126 47.6
Gohir.A13G119900 Gossypium hirsutum HOM05D004912 ORTHO05D006144 7.2e-20 102.4 108 49.1
Carub.0002s1888 Capsella rubella HOM05D004912 ORTHO05D006144 1.2e-19 101.7 386 38.9
Hund27105 Selenicereus undatus HOM05D004912 ORTHO05D006144 1.6e-19 101.3 355 37.2
PGSC0003DMG400031411 Solanum tuberosum HOM05D004912 ORTHO05D006144 1.6e-19 101.3 347 38.0
Ciclev10001073m.g Citrus clementina HOM05D004912 ORTHO05D006144 3.6e-19 100.1 128 45.3
BcaC03g15331 Brassica carinata HOM05D004912 ORTHO05D006144 6.1e-19 99.4 388 44.3
C02p29360 Brassica napus HOM05D004912 ORTHO05D006144 6.1e-19 99.4 388 44.3
BolC2t08987H Brassica oleracea HOM05D004912 ORTHO05D006144 6.1e-19 99.4 388 44.3
A02p17660 Brassica napus HOM05D004912 ORTHO05D006144 1.4e-18 98.2 388 44.6
BraA02t06813Z Brassica rapa HOM05D004912 ORTHO05D006144 1.4e-18 98.2 388 44.6
Peaxi162Scf00798g00322 Petunia axillaris HOM05D004912 ORTHO05D006144 1.8e-18 97.8 379 31.7
Solyc06g065050.2 Solanum lycopersicum HOM05D004912 ORTHO05D006144 1.8e-18 97.8 361 33.5
CAN.G635.17 Capsicum annuum HOM05D004912 ORTHO05D006144 4.0e-18 96.7 109 43.1
AL2G31720 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 8.8e-18 95.5 391 42.5
ClCG08G000690 Citrullus lanatus HOM05D004912 ORTHO05D006144 8.8e-18 95.5 351 26.8
PGR102G1759 Punica granatum HOM05D004912 ORTHO05D006144 8.8e-18 95.5 96 47.9
SGA_v2.0_scaffold118G32511 Striga asiatica HOM05D004912 ORTHO05D006144 8.8e-18 95.5 366 46.2
TWI23G1256 Tripterygium wilfordii HOM05D004912 ORTHO05D006144 1.5e-17 94.7 425 40.7
Sopen11g011640 Solanum pennellii HOM05D004912 ORTHO05D006144 2.0e-17 94.4 347 35.7
Actinidia01557 Actinidia chinensis HOM05D004912 ORTHO05D006144 3.4e-17 93.6 402 40.0
Haze_21297 Corylus avellana HOM05D004912 ORTHO05D006144 3.4e-17 93.6 128 41.4
MELO3C022195.2 Cucumis melo HOM05D004912 ORTHO05D006144 5.7e-17 92.8 361 34.9
Thhalv10018523m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 9.8e-17 92.0 381 41.5
MD15G1407700 Malus domestica HOM05D004912 ORTHO05D006144 1.3e-16 91.7 419 40.8
CARHR064910 Cardamine hirsuta HOM05D004912 ORTHO05D006144 2.8e-16 90.5 403 41.2
Lj4A484T8 Lonicera japonica HOM05D004912 ORTHO05D006144 2.8e-16 90.5 92 46.7
CSS0047311 Camellia sinensis var. sinensis HOM05D004912 ORTHO05D006144 6.3e-16 89.4 97 49.5
HanXRQChr11g0326311 Helianthus annuus HOM05D004912 ORTHO05D006144 6.3e-16 89.4 133 38.3
PGSC0003DMG400031324 Solanum tuberosum HOM05D004912 ORTHO05D006144 6.3e-16 89.4 95 47.4
BcaB05g24704 Brassica carinata HOM05D004912 ORTHO05D006144 8.3e-16 89.0 375 43.2
Solyc11g022530.3 Solanum lycopersicum HOM05D004912 ORTHO05D006144 8.3e-16 89.0 347 35.2
RcHm_v2.0_Chr7g0227991 Rosa chinensis HOM05D004912 ORTHO05D006144 1.8e-15 87.8 465 37.4
FAN04G2666 Fragaria x ananassa HOM05D004912 ORTHO05D006144 2.4e-15 87.4 476 30.5
Sp1g20090 Schrenkiella parvula HOM05D004912 ORTHO05D006144 3.1e-15 87.0 325 27.1
Cpa.g.sc66.6 Carica papaya HOM05D004912 ORTHO05D006144 7.0e-15 85.9 99 46.5
FvH4_5g31970 Fragaria vesca HOM05D004912 ORTHO05D006144 7.0e-15 85.9 472 33.5
Glyma.12G001600 Glycine max HOM05D004912 ORTHO05D006144 9.1e-15 85.5 114 43.9
TAR376G1051 Trochodendron aralioides HOM05D004912 ORTHO05D006144 9.1e-15 85.5 96 44.8
AT1G72100 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 1.2e-14 85.1 403 41.2
Hma1.2p1_0009F.1_g005990 Hydrangea macrophylla HOM05D004912 ORTHO05D006144 1.2e-14 85.1 349 41.0
Oeu059194.1 Olea europaea HOM05D004912 ORTHO05D006144 1.2e-14 85.1 352 24.7
DCAR_024339 Daucus carota HOM05D004912 ORTHO05D006144 1.6e-14 84.7 95 42.1
Psat7g146280 Pisum sativum HOM05D004912 ORTHO05D006144 2.0e-14 84.3 137 36.5
unitig_32.g11185 Utricularia gibba HOM05D004912 ORTHO05D006144 2.0e-14 84.3 349 28.9
CsaV3_5G040180 Cucumis sativus L. HOM05D004912 ORTHO05D006144 2.7e-14 84.0 361 39.6
ECA247G4121 Erigeron canadensis HOM05D004912 ORTHO05D006144 3.5e-14 83.6 129 38.0
Lalb_Chr19g0140481 Lupinus albus HOM05D004912 ORTHO05D006144 5.9e-14 82.8 92 45.7
unitig_748.g7733 Utricularia gibba HOM05D004912 ORTHO05D006144 7.7e-14 82.4 124 38.7
Psat7g146200 Pisum sativum HOM05D004912 ORTHO05D006144 1.7e-13 81.3 137 35.8
HPP92_005686 Vanilla planifolia HOM05D004912 ORTHO05D006144 1.7e-13 81.3 102 40.2
AT1G22600 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 2.3e-13 80.9 350 25.7
THA.LOC104800129 Tarenaya hassleriana HOM05D004912 ORTHO05D006144 2.3e-13 80.9 89 44.9
Migut.C01311 Erythranthe guttata HOM05D004912 ORTHO05D006144 2.9e-13 80.5 139 41.7
Lalb_Chr01g0000121 Lupinus albus HOM05D004912 ORTHO05D006144 2.9e-13 80.5 95 45.3
Migut.N03366 Erythranthe guttata HOM05D004912 ORTHO05D006144 3.8e-13 80.1 122 40.2
Manes.02G197100 Manihot esculenta HOM05D004912 ORTHO05D006144 3.8e-13 80.1 395 31.1
CARHR022970 Cardamine hirsuta HOM05D004912 ORTHO05D006144 6.5e-13 79.3 349 28.4
FAN18G2258 Fragaria x ananassa HOM05D004912 ORTHO05D006144 1.1e-12 78.6 472 33.1
Lsat_1_v5_gn_1_26081 Lactuca sativa HOM05D004912 ORTHO05D006144 1.5e-12 78.2 122 37.7
BcaB03g14195 Brassica carinata HOM05D004912 ORTHO05D006144 2.5e-12 77.4 344 25.0
DCAR_014078 Daucus carota HOM05D004912 ORTHO05D006144 4.2e-12 76.6 395 32.9
AL1G36130 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 9.5e-12 75.5 129 37.2
SEGI_22716 Sequoiadendron giganteum HOM05D004912 ORTHO05D006144 1.6e-11 74.7 123 38.2
BolC7t42633H Brassica oleracea HOM05D004912 ORTHO05D006144 3.6e-11 73.6 344 24.1
Carub.0001s2211 Capsella rubella HOM05D004912 ORTHO05D006144 3.6e-11 73.6 348 26.1
BcaC06g34978 Brassica carinata HOM05D004912 ORTHO05D006144 8.0e-11 72.4 344 24.1
C07p21010 Brassica napus HOM05D004912 ORTHO05D006144 1.0e-10 72.0 344 24.1
A07p14290 Brassica napus HOM05D004912 ORTHO05D006144 1.8e-10 71.2 325 25.5
BraA07t29186Z Brassica rapa HOM05D004912 ORTHO05D006144 1.8e-10 71.2 325 25.5
Gohir.A05G272850 Gossypium hirsutum HOM05D004912 ORTHO05D006144 3.0e-10 70.5 129 40.3
Lsat_1_v5_gn_5_118600 Lactuca sativa HOM05D004912 ORTHO05D006144 3.0e-10 70.5 105 35.2
Sed0022690 Sechium edule HOM05D004912 ORTHO05D006144 3.0e-10 70.5 359 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1722 Anthoceros agrestis HOM05D004395 ORTHO05D005234 2.6e-09 67.4 91 42.9
SMO118G0438 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 4.4e-09 66.6 100 38.0
Thhalv10008247m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 1.3e-08 65.1 104 39.4
SGA_v2.0_scaffold19G08943 Striga asiatica HOM05D004912 ORTHO05D006144 3.7e-08 63.5 96 40.6
Mapoly0029s0129 Marchantia polymorpha HOM05D004395 ORTHO05D005234 4.9e-08 63.2 69 42.0
Pp3c4_23110 Physcomitrium patens HOM05D004395 ORTHO05D005234 1.1e-07 62.0 59 47.5
CBR_g50787 Chara braunii HOM05D004395 ORTHO05D005234 1.4e-07 61.6 94 35.1
Manes.01G226500 Manihot esculenta HOM05D004395 ORTHO05D005234 2.4e-07 60.8 101 36.6
Ca_10293_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 3.1e-07 60.5 101 37.6
Ca_30262_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 3.1e-07 60.5 101 37.6
Aa31LG7G6480 Aethionema arabicum HOM05D004912 ORTHO05D006144 4.1e-07 60.1 94 35.1
Medtr1g087320 Medicago truncatula HOM05D004395 ORTHO05D005234 9.2e-07 58.9 133 32.3
vmacro00991 Vaccinium macrocarpon HOM05D004912 ORTHO05D006144 9.2e-07 58.9 129 34.9
Psat6g162440 Pisum sativum HOM05D004395 ORTHO05D005234 2.0e-06 57.8 126 31.7
CDE02G0047 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 3.5e-06 57.0 94 35.1
CDE09G1198 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 3.5e-06 57.0 96 34.4
TPR.G19763 Trifolium pratense HOM05D004395 ORTHO05D005234 3.5e-06 57.0 101 35.6
Lj5g0013155 Lotus japonicus HOM05D004395 ORTHO05D005234 4.5e-06 56.6 98 34.7
CANSAT25G2014 Cannabis sativa HOM05D004395 ORTHO05D005234 5.9e-06 56.2 101 35.6
Glyma.10G014200 Glycine max HOM05D004395 ORTHO05D005234 5.9e-06 56.2 104 35.6
MBI18_g28451_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 5.9e-06 56.2 101 35.6
VMungo0720G1854 Vigna mungo HOM05D004395 ORTHO05D005234 5.9e-06 56.2 101 35.6
Phvul.007G215400 Phaseolus vulgaris HOM05D004395 ORTHO05D005234 7.8e-06 55.8 104 35.6
Prupe.8G270400 Prunus persica HOM05D004395 ORTHO05D005234 7.8e-06 55.8 104 35.6
SEGI_05878 Sequoiadendron giganteum HOM05D004395 ORTHO05D005234 7.8e-06 55.8 94 33.0


User provided reference genes

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