Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 5.7e-74 280.8 138 100.0
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.1e-44 182.6 117 72.6
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 3.6e-44 181.8 135 65.9
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.1e-44 181.0 117 74.4
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 6.1e-44 181.0 124 72.6
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.4e-43 179.9 119 71.4
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.8e-43 179.5 133 68.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.0e-43 178.3 117 73.5
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.0e-43 178.3 112 75.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 5.2e-43 177.9 112 74.1
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 5.2e-43 177.9 110 78.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.2e-42 176.8 114 74.6
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.0e-42 176.0 112 75.0
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.0e-42 176.0 114 75.4
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.0e-42 176.0 112 73.2
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.6e-42 175.6 114 73.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.4e-42 175.3 112 75.0
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 4.4e-42 174.9 114 74.6
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 5.7e-42 174.5 112 75.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.5e-42 174.1 110 74.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 7.5e-42 174.1 114 73.7
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 7.5e-42 174.1 114 75.4
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 7.5e-42 174.1 132 65.9
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 7.5e-42 174.1 112 73.2
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 9.8e-42 173.7 112 74.1
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 9.8e-42 173.7 110 74.5
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 9.8e-42 173.7 114 74.6
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.3e-41 173.3 112 72.3
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.3e-41 173.3 114 71.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.3e-41 173.3 112 73.2
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.3e-41 173.3 112 72.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.3e-41 173.3 123 68.3
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.3e-41 173.3 117 73.5
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.7e-41 172.9 113 71.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.2e-41 172.6 115 72.2
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.2e-41 172.6 112 72.3
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 2.2e-41 172.6 114 71.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.2e-41 172.6 114 74.6
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 2.8e-41 172.2 112 71.4
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.8e-41 172.2 114 71.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.8e-41 172.2 113 75.2
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.8e-41 172.2 112 72.3
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.8e-41 172.2 113 75.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.7e-41 171.8 114 71.9
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 3.7e-41 171.8 112 72.3
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.8e-41 171.4 115 69.6
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.3e-41 171.0 114 71.1
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 8.3e-41 170.6 112 73.2
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 8.3e-41 170.6 110 73.6
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.3e-41 170.6 121 66.1
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 8.3e-41 170.6 112 72.3
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.1e-40 170.2 112 72.3
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 1.4e-40 169.9 113 71.7
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.4e-40 169.1 110 72.7
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.4e-40 169.1 115 70.4
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.4e-40 169.1 110 73.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.1e-40 168.3 112 71.4
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 4.1e-40 168.3 128 65.6
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 5.4e-40 167.9 112 71.4
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.4e-40 167.9 112 71.4
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 7.0e-40 167.5 114 71.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-39 166.8 112 69.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.6e-39 166.4 112 73.2
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.6e-39 166.4 110 72.7
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.6e-39 166.4 112 70.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.7e-39 165.6 117 67.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 5.9e-39 164.5 109 71.6
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 7.7e-39 164.1 112 72.3
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.0e-38 163.7 110 70.0
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.3e-38 163.3 134 64.9
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.3e-38 163.3 108 71.3
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 2.2e-38 162.5 110 72.7
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 3.8e-38 161.8 113 69.9
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 3.8e-38 161.8 112 70.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 5.0e-38 161.4 130 60.8
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 8.5e-38 160.6 111 70.3
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.1e-37 160.2 112 70.5
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.5e-37 159.8 112 68.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.9e-37 159.5 112 68.8
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.2e-37 158.7 112 69.6
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.2e-37 158.7 112 68.8
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.2e-37 158.7 112 68.8
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.2e-37 158.7 112 68.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 3.2e-37 158.7 112 68.8
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 7.2e-37 157.5 112 67.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 7.2e-37 157.5 118 63.6
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 7.2e-37 157.5 111 68.5
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 9.4e-37 157.1 112 67.9
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 9.4e-37 157.1 111 68.5
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.2e-36 156.8 108 68.5
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.6e-36 156.4 112 67.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.1e-36 156.0 121 64.5
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.1e-36 156.0 112 66.1
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.7e-36 155.6 109 69.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.7e-36 155.6 109 69.7
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.6e-36 155.2 112 67.0
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 4.7e-36 154.8 128 60.2
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 4.7e-36 154.8 131 58.8
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.0e-35 153.7 116 63.8
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.8e-35 152.9 130 56.2
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.3e-35 152.5 112 63.4
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.8e-35 151.0 117 62.4
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.5e-34 149.8 147 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 3.4e-34 148.7 112 64.3
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.5e-34 147.5 113 66.4
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.7e-33 146.4 112 64.3
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.2e-33 146.0 110 64.5
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 3.7e-33 145.2 116 62.1
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 6.3e-33 144.4 121 60.3
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 8.3e-33 144.1 98 70.4
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 2.7e-31 139.0 104 63.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.5e-31 138.7 92 73.9
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.3e-30 136.7 90 73.3
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.3e-30 136.0 110 63.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.1e-29 133.7 135 56.3
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-29 133.7 114 57.0
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 2.5e-29 132.5 112 59.8
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 9.5e-29 130.6 109 59.6
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 8.0e-28 127.5 113 58.4
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.8e-27 126.3 76 75.0
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.0e-27 125.6 126 53.2
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.2e-27 124.8 110 59.1
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 5.2e-27 124.8 90 64.4
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 6.8e-27 124.4 109 57.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.2e-26 123.6 113 54.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.8e-24 116.3 70 80.0
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.2e-24 115.5 92 65.2
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 5.4e-24 114.8 112 56.2
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.2e-23 113.6 76 67.1
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.0e-23 112.8 72 76.4
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-23 112.5 71 77.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.3e-22 109.4 72 73.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 3.9e-22 108.6 101 54.5
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.9e-21 106.3 73 69.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 7.3e-21 104.4 97 59.8
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.8e-20 102.4 114 51.8
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.0e-18 96.3 68 60.3
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.7e-17 92.0 93 53.8
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.9e-17 91.7 119 47.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-16 90.5 62 72.6
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 3.2e-16 89.0 119 46.2
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 6.0e-15 84.7 117 42.7
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.8e-12 75.9 112 40.2
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.8e-11 73.2 62 54.8
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.8e-10 67.4 47 55.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.4e-09 64.7 50 62.0
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.4e-08 62.8 42 69.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 4.1e-08 62.0 116 37.1
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 5.1e-06 55.1 37 64.9


User provided reference genes

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