Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 5.1e-105 384.4 193 100.0
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 8.7e-81 303.9 190 77.4
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.0e-77 292.7 190 72.1
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 3.4e-77 292.0 190 73.2
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.0e-76 290.4 189 74.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.7e-76 289.7 191 73.3
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 8.5e-76 287.3 191 72.8
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.1e-75 287.0 191 72.3
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.9e-75 286.2 191 72.3
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 2.5e-75 285.8 191 73.8
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 4.2e-75 285.0 189 69.8
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 5.5e-75 284.6 192 71.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 7.2e-75 284.3 191 73.3
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.2e-74 283.5 190 71.6
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.6e-74 283.1 191 70.7
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.6e-74 283.1 184 74.5
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 2.1e-74 282.7 191 71.2
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 2.7e-74 282.3 191 71.7
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 2.7e-74 282.3 190 71.1
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.6e-74 282.0 187 71.1
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.6e-74 282.0 187 71.7
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 4.6e-74 281.6 188 70.7
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 6.1e-74 281.2 190 72.1
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.4e-73 280.0 191 71.2
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.4e-73 280.0 190 72.6
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.8e-73 279.6 187 72.2
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 2.3e-73 279.3 188 72.3
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 2.3e-73 279.3 191 69.6
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.0e-73 278.9 189 68.8
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.9e-73 278.5 182 73.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 6.7e-73 277.7 188 69.7
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 8.8e-73 277.3 187 70.6
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 8.8e-73 277.3 190 70.0
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 1.1e-72 276.9 184 72.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 3.3e-72 275.4 190 73.2
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.3e-72 275.4 190 71.1
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.3e-72 275.0 190 71.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.7e-72 274.6 191 69.1
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.4e-72 274.2 190 69.5
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.3e-71 273.5 189 68.8
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-71 273.5 184 72.8
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.7e-71 273.1 191 70.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.2e-71 272.7 183 71.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.2e-71 272.7 187 70.6
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.8e-71 272.3 190 70.0
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 2.8e-71 272.3 187 68.4
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.8e-71 272.3 188 69.7
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 4.8e-71 271.6 190 70.0
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 4.8e-71 271.6 191 67.5
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 8.2e-71 270.8 190 66.8
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.1e-70 270.4 190 68.4
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.8e-70 269.6 190 68.9
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 2.4e-70 269.2 190 68.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.1e-70 268.9 190 68.4
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 4.1e-70 268.5 194 70.1
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 4.1e-70 268.5 190 70.0
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 6.9e-70 267.7 183 71.0
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.9e-70 267.7 184 69.0
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.2e-69 266.9 190 68.4
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.2e-69 266.9 178 70.8
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.0e-69 266.2 192 66.7
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.4e-69 265.4 192 67.2
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.4e-69 265.4 183 71.0
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 3.4e-69 265.4 190 65.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 5.9e-69 264.6 192 66.7
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 5.9e-69 264.6 184 69.6
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 7.7e-69 264.2 190 68.9
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 7.7e-69 264.2 192 66.7
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.0e-68 263.8 189 67.2
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.2e-68 262.7 189 67.7
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.0e-68 261.5 188 67.0
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 6.5e-68 261.2 192 66.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 6.5e-68 261.2 170 72.9
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.1e-67 260.4 190 66.3
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.4e-67 260.0 167 74.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.9e-67 259.6 192 65.1
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.9e-67 259.6 184 70.1
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.9e-67 259.6 190 67.9
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.9e-67 259.6 170 73.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.5e-67 259.2 191 66.5
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 4.2e-67 258.5 191 66.5
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 9.4e-67 257.3 193 66.3
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 9.4e-67 257.3 192 64.1
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.2e-66 256.9 187 68.4
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 2.7e-66 255.8 189 64.6
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 6.1e-66 254.6 193 65.8
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 6.1e-66 254.6 170 72.4
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.0e-65 253.8 174 70.1
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.8e-65 253.1 180 67.8
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 3.0e-65 252.3 165 72.7
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 5.1e-65 251.5 190 65.3
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 8.8e-65 250.8 201 63.7
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.1e-64 250.4 169 72.8
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 2.0e-64 249.6 170 71.2
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.6e-64 249.2 177 70.1
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.3e-64 248.8 203 63.1
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 3.3e-64 248.8 190 65.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 4.4e-64 248.4 166 71.7
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 4.4e-64 248.4 167 70.7
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.3e-63 246.9 173 68.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.8e-63 245.7 170 70.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.8e-63 245.7 173 68.2
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.4e-62 242.7 176 65.9
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.1e-62 241.9 166 71.1
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.3e-62 241.5 188 68.1
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.5e-61 240.0 192 62.0
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.6e-61 239.2 163 71.2
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.2e-60 236.1 164 67.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.9e-60 235.7 174 67.2
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.2e-59 232.3 170 64.1
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.6e-58 228.8 170 64.7
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 4.7e-58 228.4 189 57.7
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 4.7e-58 228.4 184 62.5
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.6e-56 222.6 168 63.7
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.6e-56 222.6 189 56.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.7e-56 221.5 170 60.6
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.3e-55 220.3 187 58.8
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 2.2e-55 219.5 137 76.6
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.8e-55 218.4 189 57.7
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 6.3e-55 218.0 188 59.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 9.1e-54 214.2 137 75.2
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-50 203.4 191 55.5
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 5.2e-49 198.4 186 52.7
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 4.4e-48 195.3 133 69.9
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 7.0e-46 188.0 118 76.3
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 7.7e-45 184.5 115 78.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.8e-44 182.2 189 48.1
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 5.0e-44 181.8 187 51.9
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.5e-44 181.4 188 54.8
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.1e-43 180.6 133 66.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.4e-41 173.7 118 72.0
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.9e-36 156.0 114 64.9
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 3.6e-34 149.1 170 50.6
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.0e-20 104.4 116 49.1
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 5.8e-16 88.6 60 73.3
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 2.5e-11 73.2 53 64.2
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 7.3e-11 71.6 54 61.1
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.2e-10 70.9 171 29.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.6e-10 70.5 170 31.2
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.6e-10 70.5 171 30.4
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.1e-10 70.1 171 30.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.1e-10 70.1 173 29.5
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 2.8e-10 69.7 168 30.4
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 3.6e-10 69.3 58 56.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 4.7e-10 68.9 169 32.0
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 6.2e-10 68.6 191 29.8
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.1e-10 68.2 168 32.7
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.1e-09 67.8 170 26.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.1e-09 67.8 170 29.4
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 3.1e-09 66.2 168 32.7
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.1e-09 66.2 172 29.7
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.1e-09 66.2 173 30.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 6.8e-09 65.1 173 30.1
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 8.9e-09 64.7 172 29.1
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.5e-08 63.9 170 30.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.0e-08 63.5 171 30.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.0e-08 63.5 170 27.6
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.6e-08 63.2 169 30.2
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.6e-08 63.2 168 29.8
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.4e-08 62.8 171 28.7
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.7e-07 60.5 170 30.6
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.7e-07 60.5 173 31.2
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 4.9e-07 58.9 170 30.6
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.9e-06 57.0 151 28.5
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.9e-06 57.0 175 27.4
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.9e-06 57.0 172 29.1
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.9e-06 57.0 171 26.9
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.4e-06 56.6 169 29.6


User provided reference genes

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