Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 8.3e-140 500.4 251 100.0
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-71 273.9 240 56.2
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-71 271.6 240 56.2
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.8e-70 270.0 245 56.3
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 2.4e-70 269.6 227 60.8
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.1e-70 268.9 228 60.1
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.1e-70 268.9 228 60.1
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.3e-70 268.5 258 51.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 5.3e-70 268.5 248 57.7
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 9.0e-70 267.7 251 54.2
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.4e-69 265.8 256 52.7
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 4.5e-69 265.4 225 58.7
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.0e-68 264.2 253 53.4
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.7e-68 263.5 253 53.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.7e-68 263.5 253 53.0
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.7e-68 263.5 253 53.0
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.2e-68 263.1 249 55.0
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.9e-68 262.7 248 54.0
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 3.8e-68 262.3 253 54.9
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 5.0e-68 261.9 274 51.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 8.4e-68 261.2 246 53.7
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 8.4e-68 261.2 258 55.0
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 8.4e-68 261.2 258 55.8
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.1e-67 260.8 257 54.1
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.4e-67 260.4 258 54.7
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.9e-67 260.0 226 59.3
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 3.2e-67 259.2 254 55.5
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 3.2e-67 259.2 245 52.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 5.5e-67 258.5 249 54.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 5.5e-67 258.5 255 54.5
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 7.2e-67 258.1 228 57.9
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 9.3e-67 257.7 233 57.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 9.3e-67 257.7 251 53.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.2e-66 257.3 245 52.2
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-66 256.1 258 54.3
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-66 256.1 258 54.3
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 3.5e-66 255.8 227 56.4
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 3.5e-66 255.8 245 51.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 6.1e-66 255.0 230 56.5
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 6.1e-66 255.0 246 52.4
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 6.1e-66 255.0 225 56.0
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 7.9e-66 254.6 257 52.5
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.0e-65 254.2 259 49.4
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.0e-65 254.2 248 56.0
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.3e-65 253.8 249 53.4
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.3e-65 253.8 225 57.8
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.3e-65 253.8 225 54.7
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 3.0e-65 252.7 251 53.8
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.0e-65 252.7 257 52.1
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 3.9e-65 252.3 241 52.7
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 3.9e-65 252.3 244 52.0
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 5.1e-65 251.9 261 50.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 5.1e-65 251.9 241 52.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 8.7e-65 251.1 235 51.9
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 8.7e-65 251.1 249 51.8
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.5e-64 250.4 251 53.4
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.5e-64 249.6 235 54.5
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.3e-64 249.2 248 55.2
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.3e-64 248.8 253 49.4
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 5.7e-64 248.4 272 51.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 7.4e-64 248.1 262 52.3
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.3e-63 247.3 257 53.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.2e-63 246.5 231 55.4
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.8e-63 246.1 232 53.9
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.8e-63 246.1 240 52.1
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 3.7e-63 245.7 281 46.3
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 3.7e-63 245.7 261 50.6
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.8e-63 245.4 256 48.8
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 6.3e-63 245.0 232 55.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 6.3e-63 245.0 232 55.2
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 6.3e-63 245.0 250 53.6
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 6.3e-63 245.0 250 52.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 6.3e-63 245.0 231 54.1
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 8.2e-63 244.6 234 54.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.4e-62 243.8 240 51.2
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.8e-62 243.4 258 51.9
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.8e-62 243.4 234 54.3
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.8e-62 243.4 234 54.3
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.4e-62 243.0 232 54.7
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 2.4e-62 243.0 266 50.0
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.1e-62 242.7 234 53.4
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.1e-62 242.7 231 55.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 5.3e-62 241.9 241 53.9
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 6.9e-62 241.5 234 53.4
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.2e-61 240.7 252 50.4
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.5e-61 240.4 231 54.1
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.6e-61 239.6 229 53.7
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.6e-61 239.6 234 53.0
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 3.4e-61 239.2 240 51.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 4.5e-61 238.8 234 52.6
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.0e-60 237.7 228 53.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.8e-60 235.7 261 50.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 4.2e-59 232.3 246 49.6
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 5.5e-59 231.9 247 49.4
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-58 229.9 211 56.4
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 4.6e-58 228.8 253 48.2
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.1e-58 228.4 268 47.8
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-55 219.5 217 52.5
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-55 219.5 183 58.5
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 6.3e-55 218.4 207 53.6
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.4e-53 212.6 257 44.4
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.0e-52 211.1 217 49.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.1e-51 207.6 318 41.5
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.5e-51 206.5 183 54.1
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 9.4e-51 204.5 243 45.3
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 4.7e-50 202.2 244 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.4e-49 200.7 228 46.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.0e-48 196.8 230 47.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 5.7e-48 195.3 183 51.4
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 4.5e-45 185.7 166 51.8
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.9e-44 183.0 246 45.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.0e-41 174.5 155 54.8
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 2.6e-40 169.9 140 60.7
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.5e-37 159.1 256 39.1
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 5.2e-33 145.6 145 48.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.8e-33 144.8 152 48.0
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.0e-29 133.7 133 51.1
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 6.5e-28 128.6 142 46.5
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.1e-26 122.1 169 41.4
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.8e-25 118.6 118 50.0
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.4e-16 89.4 98 44.9
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 9.8e-16 88.2 97 50.5
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 2.9e-15 86.7 172 34.3
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-12 77.8 231 27.7
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.5e-11 71.6 77 45.5
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 4.7e-10 69.3 290 24.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.7e-10 69.3 63 50.8
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.5e-08 64.3 55 47.3
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-06 57.8 104 36.5
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.4e-06 57.8 72 43.1
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 5.4e-06 55.8 36 75.0


User provided reference genes

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