Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.3e-239 832.8 472 100.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.2e-125 453.4 326 85.3
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.6e-75 286.2 289 58.1
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 5.3e-71 272.7 266 60.9
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.9e-69 266.2 254 60.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.5e-68 263.8 261 61.3
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.5e-68 262.7 287 55.1
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.6e-67 261.2 259 57.1
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 8.2e-64 248.8 279 57.3
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.1e-63 246.9 262 57.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 5.3e-63 246.1 259 56.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 9.0e-63 245.4 280 53.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.0e-62 244.2 285 55.8
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 2.6e-62 243.8 262 57.3
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.4e-62 243.4 284 55.3
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 7.6e-62 242.3 291 54.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.3e-61 241.5 260 56.2
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.2e-61 240.7 307 50.8
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.2e-61 240.7 271 56.1
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.2e-61 240.7 292 54.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.4e-61 238.8 256 54.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.5e-60 237.3 258 58.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.5e-60 237.3 290 54.1
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.5e-60 237.3 287 51.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 2.5e-60 237.3 290 53.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.2e-60 236.9 284 52.5
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.2e-60 236.9 318 50.3
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.2e-60 236.9 318 50.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.2e-60 236.9 276 54.7
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 4.2e-60 236.5 289 54.0
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.2e-60 236.5 265 56.2
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.5e-60 236.1 269 55.4
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 5.5e-60 236.1 287 55.4
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.2e-59 235.0 280 54.3
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.6e-59 234.6 263 55.5
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.6e-59 234.6 270 53.7
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.1e-59 234.2 262 55.7
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.1e-59 234.2 262 55.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-59 234.2 265 55.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.1e-59 234.2 280 54.3
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.5e-59 233.4 283 50.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 3.5e-59 233.4 267 55.1
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-58 231.9 282 53.2
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.8e-58 231.1 273 52.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.8e-58 231.1 291 51.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.8e-58 231.1 291 51.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.3e-58 230.7 270 53.7
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.3e-58 230.7 277 54.5
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.0e-58 230.3 261 52.9
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.9e-58 229.9 280 53.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.9e-58 229.9 280 53.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.9e-58 229.9 263 55.5
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.9e-58 229.9 274 55.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 5.1e-58 229.6 264 54.2
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.1e-58 229.6 284 50.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 6.7e-58 229.2 264 58.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 6.7e-58 229.2 279 52.7
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 8.7e-58 228.8 263 55.5
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.1e-57 228.4 260 53.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.5e-57 228.0 285 51.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.5e-57 227.3 321 50.2
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.3e-57 226.9 282 53.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.7e-57 226.1 198 65.2
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 5.7e-57 226.1 287 51.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 7.4e-57 225.7 287 50.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.4e-57 225.7 284 51.4
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.7e-57 225.3 256 53.9
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 9.7e-57 225.3 288 52.8
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.6e-56 224.6 294 51.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.8e-56 223.8 277 51.3
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.3e-56 222.6 275 52.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 6.3e-56 222.6 289 50.5
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 8.2e-56 222.2 280 52.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 8.2e-56 222.2 268 53.4
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.1e-55 221.9 292 50.7
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.8e-55 221.1 275 50.9
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.1e-55 219.9 258 51.6
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 5.3e-55 219.5 286 50.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.2e-54 218.4 295 48.5
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.2e-54 218.4 274 53.3
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.0e-54 217.6 301 49.2
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.6e-54 217.2 285 50.9
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 3.4e-54 216.9 291 49.5
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.3e-53 214.9 281 50.5
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.7e-53 214.5 293 49.1
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-53 213.4 259 49.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.0e-53 213.0 259 51.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 8.5e-53 212.2 260 51.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 8.5e-53 212.2 273 49.8
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-52 211.1 272 51.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 3.2e-52 210.3 293 47.4
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 5.5e-52 209.5 259 51.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 7.2e-52 209.1 304 47.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 7.2e-52 209.1 260 52.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.2e-51 208.4 273 52.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.6e-51 208.0 260 48.8
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.6e-51 208.0 279 49.1
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.7e-51 207.2 296 49.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.7e-51 207.2 266 50.8
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.6e-51 206.8 263 50.2
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 3.6e-51 206.8 277 50.5
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 7.9e-51 205.7 272 51.8
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.0e-50 203.8 285 47.0
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 3.9e-50 203.4 272 50.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.1e-50 203.0 301 47.5
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 5.1e-50 203.0 264 49.6
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 5.1e-50 203.0 248 49.6
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 6.7e-50 202.6 292 47.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-49 201.1 267 49.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.0e-49 201.1 270 48.9
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.3e-49 200.3 287 49.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 4.3e-49 199.9 260 50.8
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.7e-49 199.5 262 48.9
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-48 198.4 239 51.9
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.7e-48 198.0 212 56.6
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.7e-48 196.8 255 49.8
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 4.8e-48 196.4 274 49.6
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 8.2e-48 195.7 257 49.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.8e-47 194.5 270 48.9
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 6.9e-47 192.6 255 49.0
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.2e-46 191.8 167 65.3
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.4e-46 190.3 222 55.9
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.3e-45 188.3 265 46.4
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.8e-45 186.8 222 55.0
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.8e-45 186.8 283 42.8
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.9e-42 176.8 151 64.9
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-41 175.3 139 68.3
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.8e-39 167.9 286 45.1
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.8e-39 167.9 265 44.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.1e-39 167.2 258 46.1
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.0e-37 162.2 123 71.5
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.9e-37 160.6 178 52.8
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 5.0e-37 159.8 270 40.7
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 8.5e-37 159.1 283 39.2
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.4e-36 158.3 154 61.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.5e-36 156.4 169 56.2
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 3.6e-35 153.7 283 40.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 9.7e-33 145.6 276 40.2
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.7e-33 145.6 252 40.1
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.7e-32 144.8 276 36.6
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.8e-31 141.4 138 60.1
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 7.0e-31 139.4 198 46.0
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.2e-30 138.7 117 65.0
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.5e-29 132.5 108 62.0
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.1e-28 132.1 131 52.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.2e-28 130.6 162 47.5
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.2e-28 130.2 98 64.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.8e-26 124.8 167 43.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.6e-25 120.9 276 37.3
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 7.5e-25 119.4 239 36.8
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 5.3e-23 113.2 97 60.8
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-16 91.7 134 46.3
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.6e-14 85.1 67 68.7
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.5e-12 78.6 154 40.3
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 9.5e-12 75.9 121 43.0
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 2.3e-10 71.2 154 40.9
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.9e-06 56.6 136 34.6


User provided reference genes

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