Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.3e-137 493.0 248 100.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.7e-105 386.3 243 77.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.9e-105 385.6 248 76.6
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 5.0e-105 384.8 243 78.2
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 5.0e-105 384.8 243 77.8
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 6.5e-105 384.4 243 77.4
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 6.5e-105 384.4 243 77.8
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 8.5e-105 384.0 242 78.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.1e-104 383.6 249 76.3
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.9e-104 382.9 243 79.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.9e-104 382.9 248 75.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 2.5e-104 382.5 248 75.0
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.5e-104 382.5 242 77.7
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.5e-104 382.5 243 79.4
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.2e-104 382.1 247 76.1
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.2e-104 381.7 243 78.6
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 4.2e-104 381.7 243 78.6
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 5.5e-104 381.3 240 79.2
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.2e-104 380.9 248 74.6
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 7.2e-104 380.9 243 77.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 7.2e-104 380.9 242 77.3
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 9.4e-104 380.6 243 77.0
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.2e-103 380.2 243 77.4
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.2e-103 380.2 248 75.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.2e-103 380.2 248 75.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-103 379.8 243 77.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-103 379.8 243 77.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.1e-103 379.4 243 77.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.7e-103 379.0 243 77.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.7e-103 379.0 240 78.3
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.6e-103 378.6 243 76.5
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 3.6e-103 378.6 243 77.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 3.6e-103 378.6 243 77.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.6e-103 378.6 247 76.1
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.7e-103 378.3 243 77.0
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 4.7e-103 378.3 243 76.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 4.7e-103 378.3 243 75.7
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 4.7e-103 378.3 243 76.1
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 6.1e-103 377.9 248 74.6
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 6.1e-103 377.9 243 75.7
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 6.1e-103 377.9 242 76.4
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 8.0e-103 377.5 243 74.9
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 8.0e-103 377.5 243 77.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 8.0e-103 377.5 243 75.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.0e-102 377.1 243 77.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.0e-102 377.1 243 75.3
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.4e-102 376.7 248 74.6
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.8e-102 376.3 243 77.0
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.8e-102 376.3 243 77.0
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.3e-102 375.9 243 76.5
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 2.3e-102 375.9 243 76.5
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 2.3e-102 375.9 243 76.5
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.0e-102 375.2 256 72.7
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 5.2e-102 374.8 248 73.4
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.2e-102 374.8 248 74.2
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 8.8e-102 374.0 248 74.2
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.5e-101 373.2 243 75.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.5e-101 373.2 243 74.5
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.0e-101 372.9 242 75.2
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.0e-101 372.9 243 74.5
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.4e-101 372.1 243 74.1
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 5.7e-101 371.3 243 74.1
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 7.5e-101 370.9 253 73.1
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 7.5e-101 370.9 243 75.7
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 7.5e-101 370.9 243 74.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.3e-100 370.2 242 74.0
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.3e-100 370.2 242 74.0
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.7e-100 368.6 243 75.7
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 6.3e-100 367.9 242 73.6
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.4e-99 366.7 242 74.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 4.1e-99 365.2 248 71.8
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 7.0e-99 364.4 242 73.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 7.0e-99 364.4 242 73.1
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 7.0e-99 364.4 243 76.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-98 363.6 242 73.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-98 363.6 242 73.1
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.2e-98 363.6 242 73.6
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.0e-98 362.8 242 73.1
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 2.0e-98 362.8 242 72.7
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.0e-98 362.8 265 70.2
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 3.5e-98 362.1 263 70.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 4.5e-98 361.7 242 72.7
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 4.5e-98 361.7 242 72.7
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-97 360.1 241 71.0
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 8.6e-97 357.5 243 70.8
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.9e-96 356.3 244 73.0
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.9e-96 356.3 233 76.4
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.9e-96 356.3 290 65.5
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 5.5e-96 354.8 227 75.8
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.1e-95 352.8 295 62.7
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.8e-95 352.4 227 74.9
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.0e-94 350.5 244 71.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.5e-93 346.7 244 66.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 7.5e-93 344.4 210 79.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.7e-92 342.0 243 69.5
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.4e-91 339.3 238 69.3
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.1e-91 339.0 243 70.8
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.1e-88 330.5 241 68.9
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.5e-88 329.3 213 77.0
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 8.9e-86 320.9 253 66.0
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.3e-84 317.0 238 65.1
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.9e-84 315.1 248 66.9
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.1e-79 299.7 229 65.9
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 6.2e-79 298.1 243 63.8
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 5.2e-78 295.0 248 63.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 8.9e-78 294.3 194 76.3
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.2e-76 289.7 322 52.8
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 9.2e-75 284.3 174 79.3
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.6e-73 278.1 206 66.5
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.6e-71 273.5 240 54.6
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.6e-69 266.2 187 71.7
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 7.1e-67 258.1 206 65.5
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 3.6e-63 245.7 250 51.2
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 8.9e-62 241.1 176 68.2
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 8.1e-55 218.0 192 59.4
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.8e-54 216.9 155 69.0
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.9e-51 206.8 152 66.4
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 9.3e-51 204.5 211 55.9
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.3e-49 200.7 122 81.1
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.9e-45 184.5 110 79.1
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.2e-44 183.3 250 44.8
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 8.4e-44 181.4 242 45.5
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.2e-42 177.6 242 38.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.6e-40 168.7 93 83.9
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 3.7e-39 166.0 93 82.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.4e-35 154.1 92 78.3
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.4e-35 154.1 99 74.7
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-34 150.2 91 76.9
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.1e-30 137.9 158 53.2
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 2.8e-23 113.2 124 52.4
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.1e-16 91.3 58 69.0
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 2.8e-15 86.7 99 46.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 5.3e-14 82.4 136 42.6
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.0e-12 78.2 44 77.3
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 2.3e-09 67.0 55 61.8
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.8e-07 60.1 55 54.5
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 2.8e-07 60.1 30 83.3


User provided reference genes

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