Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.4e-66 256.1 125 100.0
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.1e-11 70.9 57 57.9
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 5.2e-10 68.2 55 58.2
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.2e-09 67.0 54 63.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-09 67.0 55 58.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 3.4e-09 65.5 58 56.9
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 5.8e-09 64.7 62 51.6
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 5.8e-09 64.7 62 51.6
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 7.5e-09 64.3 54 63.0
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 7.5e-09 64.3 57 56.1
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.3e-08 63.5 54 61.1
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.3e-08 63.5 54 61.1
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 2.9e-08 62.4 58 58.6
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 3.7e-08 62.0 39 66.7
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 4.9e-08 61.6 59 57.6
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 4.9e-08 61.6 59 55.9
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 6.4e-08 61.2 53 54.7
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.1e-07 60.5 53 60.4
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.1e-07 60.5 57 57.9
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.1e-07 60.5 54 59.3
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.1e-07 60.5 38 73.7
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.4e-07 60.1 63 54.0
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-07 60.1 50 62.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.4e-07 60.1 50 60.0
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-07 60.1 57 50.9
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.4e-07 60.1 57 50.9
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.4e-07 60.1 46 63.0
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-07 59.7 55 58.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.9e-07 59.7 54 61.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.9e-07 59.7 42 61.9
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.4e-07 59.3 54 57.4
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.2e-07 58.9 54 55.6
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.2e-07 58.9 54 55.6
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 3.2e-07 58.9 39 64.1
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 3.2e-07 58.9 54 59.3
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.2e-07 58.9 39 66.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 3.2e-07 58.9 34 73.5
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 3.2e-07 58.9 57 50.9
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 4.1e-07 58.5 50 54.0
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 4.1e-07 58.5 38 65.8
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 4.1e-07 58.5 56 50.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.1e-07 58.5 56 50.0
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 4.1e-07 58.5 59 52.5
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.1e-07 58.5 57 49.1
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 4.1e-07 58.5 63 47.6
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.1e-07 58.5 46 58.7
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 4.1e-07 58.5 43 72.1
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 5.4e-07 58.2 55 56.4
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 5.4e-07 58.2 50 54.0
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 5.4e-07 58.2 50 60.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.4e-07 58.2 46 60.9
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 5.4e-07 58.2 31 77.4
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 5.4e-07 58.2 43 60.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 7.1e-07 57.8 47 66.0
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 7.1e-07 57.8 34 76.5
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 7.1e-07 57.8 34 76.5
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.1e-07 57.8 34 76.5
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 9.2e-07 57.4 42 66.7
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 9.2e-07 57.4 34 70.6
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 9.2e-07 57.4 34 70.6
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 9.2e-07 57.4 43 62.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 9.2e-07 57.4 57 49.1
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 9.2e-07 57.4 60 51.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 9.2e-07 57.4 45 64.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 9.2e-07 57.4 53 58.5
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 9.2e-07 57.4 33 75.8
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.2e-06 57.0 43 65.1
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.2e-06 57.0 25 92.0
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.2e-06 57.0 25 92.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.2e-06 57.0 25 92.0
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.2e-06 57.0 25 92.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.2e-06 57.0 40 67.5
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.2e-06 57.0 56 50.0
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.2e-06 57.0 25 92.0
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-06 57.0 25 92.0
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-06 57.0 25 92.0
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.2e-06 57.0 45 62.2
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.2e-06 57.0 28 82.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.2e-06 57.0 35 74.3
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.2e-06 57.0 54 53.7
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.2e-06 57.0 57 52.6
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.6e-06 56.6 59 50.8
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.6e-06 56.6 30 83.3
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.6e-06 56.6 63 54.0
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.6e-06 56.6 25 88.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.6e-06 56.6 34 76.5
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.6e-06 56.6 28 82.1
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.6e-06 56.6 57 49.1
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-06 56.6 54 46.3
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.6e-06 56.6 29 82.8
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.1e-06 56.2 35 71.4
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.1e-06 56.2 35 71.4
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.1e-06 56.2 35 65.7
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.1e-06 56.2 34 67.6
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.1e-06 56.2 51 64.7
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.7e-06 55.8 25 88.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.7e-06 55.8 25 88.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.7e-06 55.8 55 54.5
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 2.7e-06 55.8 25 88.0
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.7e-06 55.8 25 88.0
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.7e-06 55.8 50 50.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.7e-06 55.8 57 50.9
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.7e-06 55.8 53 56.6
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 2.7e-06 55.8 39 61.5
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 2.7e-06 55.8 62 46.8
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 3.5e-06 55.5 34 76.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.5e-06 55.5 25 92.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.5e-06 55.5 41 58.5
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.5e-06 55.5 59 49.2
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.5e-06 55.5 50 54.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 3.5e-06 55.5 25 92.0
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.5e-06 55.5 57 52.6
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 4.6e-06 55.1 59 49.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 4.6e-06 55.1 24 91.7
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 4.6e-06 55.1 25 84.0
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 4.6e-06 55.1 26 80.8
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 6.0e-06 54.7 25 88.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 6.0e-06 54.7 42 64.3
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 6.0e-06 54.7 57 52.6
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 6.0e-06 54.7 25 88.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 7.8e-06 54.3 62 50.0
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 7.8e-06 54.3 24 91.7
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.8e-06 54.3 25 84.0


User provided reference genes

Program Settings