Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1324 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 4.1e-136 488.0 244 100.0
ATR0329G046 Amborella trichopoda HOM05D003424 ORTHO05D004025 4.3e-117 424.9 243 84.4
Os07g0222300 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 1.0e-110 403.7 239 78.7
SEGI_12156 Sequoiadendron giganteum HOM05D003424 ORTHO05D004025 1.0e-110 403.7 242 79.8
Nn7g36420 Nelumbo nucifera HOM05D003424 ORTHO05D004025 3.0e-110 402.1 237 80.6
Zm00001eb095240 Zea mays HOM05D003424 ORTHO05D004025 1.9e-109 399.4 243 78.6
Aqoxy2G00237 Aquilegia oxysepala HOM05D003424 ORTHO05D004025 4.3e-109 398.3 240 80.8
Zm00001eb303380 Zea mays HOM05D003424 ORTHO05D004025 1.6e-108 396.4 243 78.6
Os07g0167000 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 4.0e-107 391.7 244 77.0
Mapoly0007s0188 Marchantia polymorpha HOM05D003424 ORTHO05D004025 6.9e-107 391.0 241 76.8
Nn2g15108 Nelumbo nucifera HOM05D003424 ORTHO05D004025 2.0e-106 389.4 242 76.4
TAR623G1380 Trochodendron aralioides HOM05D003424 ORTHO05D004025 6.4e-105 384.4 233 79.0
Dinv39664 Davidia involucrata HOM05D003424 ORTHO05D004025 1.9e-104 382.9 243 76.5
Lj1C1124G13 Lonicera japonica HOM05D003424 ORTHO05D004025 1.3e-102 376.7 243 73.7
Glyma.10G106100 Glycine max HOM05D003424 ORTHO05D004025 1.8e-102 376.3 243 74.5
QL07p003998 Quercus lobata HOM05D003424 ORTHO05D004025 1.8e-102 376.3 233 76.0
Lj5g0010982 Lotus japonicus HOM05D003424 ORTHO05D004025 2.3e-102 375.9 243 74.9
MD12G1083100 Malus domestica HOM05D003424 ORTHO05D004025 5.1e-102 374.8 233 76.0
Pp3c8_15010 Physcomitrium patens HOM05D003424 ORTHO05D004025 5.1e-102 374.8 241 73.0
MD14G1078200 Malus domestica HOM05D003424 ORTHO05D004025 6.7e-102 374.4 233 76.0
HPP92_006701 Vanilla planifolia HOM05D003424 ORTHO05D004025 8.7e-102 374.0 223 79.8
Ca_12264_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 1.1e-101 373.6 243 74.1
Ca_30550_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 1.1e-101 373.6 243 74.1
Glyma.02G187100 Glycine max HOM05D003424 ORTHO05D004025 1.1e-101 373.6 240 74.2
Medtr1g051820 Medicago truncatula HOM05D003424 ORTHO05D004025 1.1e-101 373.6 243 74.5
Phvul.007G250100 Phaseolus vulgaris HOM05D003424 ORTHO05D004025 1.1e-101 373.6 243 74.5
VMungo0720G2843 Vigna mungo HOM05D003424 ORTHO05D004025 1.1e-101 373.6 243 74.5
Prupe.7G052700 Prunus persica HOM05D003424 ORTHO05D004025 1.5e-101 373.2 237 75.1
Hund12364 Selenicereus undatus HOM05D003424 ORTHO05D004025 1.5e-101 373.2 243 73.7
CiPaw.09G040700 Carya illinoinensis HOM05D003424 ORTHO05D004025 1.9e-101 372.9 235 75.3
PSO675G7866 Papaver somniferum HOM05D003424 ORTHO05D004025 1.9e-101 372.9 244 75.8
PGR004G2306 Punica granatum HOM05D003424 ORTHO05D004025 1.9e-101 372.9 243 73.7
GSVIVG01005045001 Vitis vinifera HOM05D003424 ORTHO05D004025 3.3e-101 372.1 243 73.3
PSO675G6801 Papaver somniferum HOM05D003424 ORTHO05D004025 4.3e-101 371.7 235 76.2
arahy.Tifrunner.gnm1.ann1.MH7EBB Arachis hypogaea HOM05D003424 ORTHO05D004025 5.6e-101 371.3 243 74.1
arahy.Tifrunner.gnm1.ann1.ZS3MQE Arachis hypogaea HOM05D003424 ORTHO05D004025 5.6e-101 371.3 243 74.1
Cc06_g18160 Coffea canephora HOM05D003424 ORTHO05D004025 5.6e-101 371.3 243 72.8
Cc06_g18170 Coffea canephora HOM05D003424 ORTHO05D004025 5.6e-101 371.3 243 72.8
Pp3c20_5690 Physcomitrium patens HOM05D003424 ORTHO05D004025 5.6e-101 371.3 241 72.2
Manes.03G083194 Manihot esculenta HOM05D003424 ORTHO05D004025 7.4e-101 370.9 243 73.7
Manes.03G083258 Manihot esculenta HOM05D003424 ORTHO05D004025 7.4e-101 370.9 243 73.7
Manes.03G083290 Manihot esculenta HOM05D003424 ORTHO05D004025 7.4e-101 370.9 243 73.7
Manes.03G083322 Manihot esculenta HOM05D003424 ORTHO05D004025 7.4e-101 370.9 243 73.7
RcHm_v2.0_Chr3g0483891 Rosa chinensis HOM05D003424 ORTHO05D004025 9.6e-101 370.5 231 75.8
Cpa.g.sc182.25 Carica papaya HOM05D003424 ORTHO05D004025 1.3e-100 370.2 242 71.9
CANSAT80G0981 Cannabis sativa HOM05D003424 ORTHO05D004025 2.1e-100 369.4 233 74.2
CANSAT80G2233 Cannabis sativa HOM05D003424 ORTHO05D004025 2.1e-100 369.4 233 74.2
Manes.09G010401 Manihot esculenta HOM05D003424 ORTHO05D004025 2.1e-100 369.4 243 73.3
ClCG04G003770 Citrullus lanatus HOM05D003424 ORTHO05D004025 2.8e-100 369.0 242 74.4
Duzib093G1716 Durio zibethinus HOM05D003424 ORTHO05D004025 2.8e-100 369.0 244 73.4
FAN02G1912 Fragaria x ananassa HOM05D003424 ORTHO05D004025 2.8e-100 369.0 243 73.7
SGA_v2.0_scaffold105G30370 Striga asiatica HOM05D003424 ORTHO05D004025 2.8e-100 369.0 243 72.8
Atru.chr1.1209 Acer truncatum HOM05D003424 ORTHO05D004025 3.7e-100 368.6 240 72.9
COL.COLO4_36514 Corchorus olitorius HOM05D003424 ORTHO05D004025 3.7e-100 368.6 243 72.4
Manes.09G010300 Manihot esculenta HOM05D003424 ORTHO05D004025 4.8e-100 368.2 243 73.3
TWI53G0167 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 4.8e-100 368.2 233 75.5
Duzib128G0558 Durio zibethinus HOM05D003424 ORTHO05D004025 8.1e-100 367.5 240 73.8
Medtr2g079780 Medicago truncatula HOM05D003424 ORTHO05D004025 1.4e-99 366.7 233 73.8
Nitab4.5_0000364g0010 Nicotiana tabacum HOM05D003424 ORTHO05D004025 1.4e-99 366.7 243 73.7
CiPaw.10G035800 Carya illinoinensis HOM05D003424 ORTHO05D004025 1.8e-99 366.3 235 74.0
Lalb_Chr23g0274141 Lupinus albus HOM05D003424 ORTHO05D004025 1.8e-99 366.3 243 72.4
Sabra06G0033100 Salix brachista HOM05D003424 ORTHO05D004025 1.8e-99 366.3 243 72.0
TWI77G0522 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 1.8e-99 366.3 233 75.1
MELO3C026327.2 Cucumis melo HOM05D003424 ORTHO05D004025 3.1e-99 365.5 243 73.3
FAN05G4136 Fragaria x ananassa HOM05D003424 ORTHO05D004025 3.1e-99 365.5 243 72.8
Thecc.05G303700 Theobroma cacao HOM05D003424 ORTHO05D004025 3.1e-99 365.5 233 74.7
CsaV3_4G027730 Cucumis sativus L. HOM05D003424 ORTHO05D004025 4.0e-99 365.2 243 73.3
Lalb_Chr08g0235171 Lupinus albus HOM05D003424 ORTHO05D004025 4.0e-99 365.2 243 73.3
Potri.006G047600 Populus trichocarpa HOM05D003424 ORTHO05D004025 6.9e-99 364.4 240 72.5
Cc00_g29150 Coffea canephora HOM05D003424 ORTHO05D004025 9.0e-99 364.0 227 76.2
DCAR_020512 Daucus carota HOM05D003424 ORTHO05D004025 9.0e-99 364.0 243 72.4
Lalb_Chr08g0235181 Lupinus albus HOM05D003424 ORTHO05D004025 9.0e-99 364.0 243 72.8
Sc19g0008510 Simmondsia chinensis HOM05D003424 ORTHO05D004025 9.0e-99 364.0 231 73.6
Migut.J01716 Erythranthe guttata HOM05D003424 ORTHO05D004025 1.2e-98 363.6 243 71.2
Ciclev10004983m.g Citrus clementina HOM05D003424 ORTHO05D004025 1.5e-98 363.2 243 72.8
Sabra16G0048600 Salix brachista HOM05D003424 ORTHO05D004025 2.0e-98 362.8 233 75.1
BcaB02g08321 Brassica carinata HOM05D003424 ORTHO05D004025 3.4e-98 362.1 243 71.6
Carub.0005s2414 Capsella rubella HOM05D003424 ORTHO05D004025 4.5e-98 361.7 243 72.0
Migut.K00104 Erythranthe guttata HOM05D003424 ORTHO05D004025 7.6e-98 360.9 233 72.1
Gohir.A11G309600 Gossypium hirsutum HOM05D003424 ORTHO05D004025 7.6e-98 360.9 240 71.7
Potri.016G043800 Populus trichocarpa HOM05D003424 ORTHO05D004025 9.9e-98 360.5 243 72.4
A04p03210 Brassica napus HOM05D003424 ORTHO05D004025 1.7e-97 359.8 243 70.8
BraA04t16043Z Brassica rapa HOM05D003424 ORTHO05D004025 1.7e-97 359.8 243 70.8
Thhalv10005924m.g Eutrema salsugineum HOM05D003424 ORTHO05D004025 1.7e-97 359.8 243 71.6
Gohir.D11G324900 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.7e-97 359.8 240 71.2
Sp5g05310 Schrenkiella parvula HOM05D003424 ORTHO05D004025 1.7e-97 359.8 243 71.6
AL5G38830 Arabidopsis lyrata HOM05D003424 ORTHO05D004025 2.2e-97 359.4 243 71.2
Gohir.D11G325000 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.2e-97 359.4 240 71.2
Gorai.007G355800 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.2e-97 359.4 240 71.2
AT3G57290 Arabidopsis thaliana HOM05D003424 ORTHO05D004025 2.9e-97 359.0 243 70.8
Gorai.007G355700 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.9e-97 359.0 240 70.4
A09p50210 Brassica napus HOM05D003424 ORTHO05D004025 6.4e-97 357.8 243 71.2
BraA09t40471Z Brassica rapa HOM05D003424 ORTHO05D004025 6.4e-97 357.8 243 71.2
AUR62026108 Chenopodium quinoa HOM05D003424 ORTHO05D004025 8.4e-97 357.5 238 71.4
Lsat_1_v5_gn_8_117161 Lactuca sativa HOM05D003424 ORTHO05D004025 8.4e-97 357.5 240 69.6
BcaC07g40058 Brassica carinata HOM05D003424 ORTHO05D004025 1.1e-96 357.1 243 71.2
BcaC07g40060 Brassica carinata HOM05D003424 ORTHO05D004025 1.1e-96 357.1 243 71.2
C04p35090 Brassica napus HOM05D003424 ORTHO05D004025 1.4e-96 356.7 243 70.4
BolC4t25065H Brassica oleracea HOM05D003424 ORTHO05D004025 1.4e-96 356.7 243 70.4
C08p32690 Brassica napus HOM05D003424 ORTHO05D004025 1.9e-96 356.3 243 71.2
BolC8t50881H Brassica oleracea HOM05D003424 ORTHO05D004025 1.9e-96 356.3 243 71.2
THA.LOC104801979 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 1.9e-96 356.3 240 68.3
CARHR167490 Cardamine hirsuta HOM05D003424 ORTHO05D004025 2.4e-96 355.9 243 70.4
MSTRG.6406 Avicennia marina HOM05D003424 ORTHO05D004025 3.2e-96 355.5 243 69.5
Eucgr.A02306 Eucalyptus grandis HOM05D003424 ORTHO05D004025 4.2e-96 355.1 240 69.6
Psat5g246160 Pisum sativum HOM05D003424 ORTHO05D004025 5.5e-96 354.8 215 78.1
Rhsim04G0106600 Rhododendron simsii HOM05D003424 ORTHO05D004025 1.2e-95 353.6 256 68.0
Aa31LG1G23570 Aethionema arabicum HOM05D003424 ORTHO05D004025 1.6e-95 353.2 243 70.0
HanXRQChr09g0258441 Helianthus annuus HOM05D003424 ORTHO05D004025 1.6e-95 353.2 243 68.3
CAN.G1656.4 Capsicum annuum HOM05D003424 ORTHO05D004025 3.5e-95 352.1 243 71.2
FAN14G2785 Fragaria x ananassa HOM05D003424 ORTHO05D004025 3.5e-95 352.1 276 64.9
EL10Ac3g07146 Beta vulgaris HOM05D003424 ORTHO05D004025 6.0e-95 351.3 226 73.9
HanXRQChr08g0229101 Helianthus annuus HOM05D003424 ORTHO05D004025 1.0e-94 350.5 243 68.3
Sopen10g030490 Solanum pennellii HOM05D003424 ORTHO05D004025 1.8e-94 349.7 233 71.7
THA.LOC104824428 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 1.8e-94 349.7 243 67.5
Solyc10g079880.2 Solanum lycopersicum HOM05D003424 ORTHO05D004025 3.0e-94 349.0 233 71.7
Psat6g117080 Pisum sativum HOM05D003424 ORTHO05D004025 1.1e-93 347.1 213 77.5
PGSC0003DMG400029829 Solanum tuberosum HOM05D003424 ORTHO05D004025 1.1e-93 347.1 233 71.7
Aa31LG10G12160 Aethionema arabicum HOM05D003424 ORTHO05D004025 1.5e-93 346.7 240 68.3
CBR_g48694 Chara braunii HOM05D003424 ORTHO05D004025 1.9e-93 346.3 241 70.5
TAR633G0793 Trochodendron aralioides HOM05D003424 ORTHO05D004025 3.3e-93 345.5 217 76.0
Sp4g23800 Schrenkiella parvula HOM05D003424 ORTHO05D004025 1.6e-92 343.2 241 68.5
Os07g0503700 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 2.8e-92 342.4 233 70.4
ECA232G2680 Erigeron canadensis HOM05D003424 ORTHO05D004025 3.7e-92 342.0 233 67.0
Gohir.A11G309500 Gossypium hirsutum HOM05D003424 ORTHO05D004025 9.0e-91 337.4 240 67.9
CDE09G0956 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 3.8e-89 332.0 225 77.8
Nitab4.5_0000677g0120 Nicotiana tabacum HOM05D003424 ORTHO05D004025 8.4e-89 330.9 243 68.3
SMO223G0020 Selaginella moellendorffii HOM05D003424 ORTHO05D004025 3.1e-83 312.4 237 62.0
Cre12.g498100 Chlamydomonas reinhardtii HOM05D003424 ORTHO05D004025 4.3e-77 292.0 235 60.0
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.2e-76 289.7 171 79.5
PRCOL_00006598 Prasinoderma coloniale HOM05D003424 ORTHO05D004025 6.3e-76 288.1 232 62.1
MCO16G302 Micromonas commoda HOM05D003424 ORTHO05D004025 1.8e-75 286.6 235 59.6
Hma1.2p1_0110F.1_g052940 Hydrangea macrophylla HOM05D003424 ORTHO05D004025 9.1e-75 284.3 240 60.8
Cfa000245 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.1e-72 277.3 241 61.4
Cfa016772 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.9e-72 276.6 243 59.3
FvH4_6g24580 Fragaria vesca HOM05D003424 ORTHO05D004025 1.9e-72 276.6 165 77.6
Haze_21124 Corylus avellana HOM05D003424 ORTHO05D004025 1.0e-70 270.8 241 59.3
Cfa017072 Carpinus fangiana HOM05D003424 ORTHO05D004025 3.9e-70 268.9 240 59.2
BcaB02g07613 Brassica carinata HOM05D003424 ORTHO05D004025 5.1e-70 268.5 213 64.3
AUR62024517 Chenopodium quinoa HOM05D003424 ORTHO05D004025 1.1e-67 260.8 238 57.1
Haze_26473 Corylus avellana HOM05D003424 ORTHO05D004025 7.7e-66 254.6 236 52.5
Peaxi162Scf00069g01214 Petunia axillaris HOM05D003424 ORTHO05D004025 1.7e-65 253.4 243 55.6
Ah.04g164170 Amaranthus hybridus HOM05D003424 ORTHO05D004025 5.0e-65 251.9 262 53.8
Haze_19783 Corylus avellana HOM05D003424 ORTHO05D004025 1.4e-62 243.8 243 53.1
Sed0024607 Sechium edule HOM05D003424 ORTHO05D004025 1.1e-61 240.7 178 68.0
Actinidia17671 Actinidia chinensis HOM05D003424 ORTHO05D004025 4.1e-51 205.7 227 48.9
Pp3c24_6740 Physcomitrium patens HOM05D003424 ORTHO05D004025 9.1e-51 204.5 118 80.5
Cfa022230 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.2e-50 204.1 244 44.7
SalBow6G0750 Salvia bowleyana HOM05D003424 ORTHO05D004025 6.5e-49 198.4 116 78.4
Zm00001eb131780 Zea mays HOM05D003424 ORTHO05D004025 1.5e-48 197.2 110 81.8
Psat5g243200 Pisum sativum HOM05D003424 ORTHO05D004025 2.5e-48 196.4 110 82.7
vmacro09050 Vaccinium macrocarpon HOM05D003424 ORTHO05D004025 9.4e-48 194.5 209 50.7
Sed0005407 Sechium edule HOM05D003424 ORTHO05D004025 2.7e-47 193.0 118 76.3
Zm00001eb312750 Zea mays HOM05D003424 ORTHO05D004025 3.5e-42 176.0 99 81.8
Zm00001eb184800 Zea mays HOM05D003424 ORTHO05D004025 9.2e-35 151.4 101 72.3
Zm00001eb020310 Zea mays HOM05D003424 ORTHO05D004025 1.6e-34 150.6 101 72.3
Zm00001eb414290 Zea mays HOM05D003424 ORTHO05D004025 1.6e-34 150.6 101 72.3
Zm00001eb184380 Zea mays HOM05D003424 ORTHO05D004025 3.5e-34 149.4 101 71.3
Zm00001eb313750 Zea mays HOM05D003424 ORTHO05D004025 4.5e-34 149.1 101 71.3
Zm00001eb228750 Zea mays HOM05D003424 ORTHO05D004025 7.8e-34 148.3 101 71.3
Zm00001eb392860 Zea mays HOM05D003424 ORTHO05D004025 7.8e-34 148.3 101 71.3
Manes.03G083226 Manihot esculenta HOM05D003424 ORTHO05D004025 1.2e-31 141.0 104 65.4
Zm00001eb022800 Zea mays HOM05D003424 ORTHO05D004025 1.6e-31 140.6 77 83.1
Zm00001eb019980 Zea mays HOM05D003424 ORTHO05D004025 1.6e-26 124.0 88 69.3
Oeu033903.1 Olea europaea HOM05D003424 ORTHO05D004025 1.0e-25 121.3 95 58.9
TPR.G8064 Trifolium pratense HOM05D003424 ORTHO05D004025 1.3e-25 120.9 93 64.5
Zm00001eb314210 Zea mays HOM05D003424 ORTHO05D004025 3.0e-25 119.8 85 69.4
BcaC02g09927 Brassica carinata HOM05D003424 ORTHO05D004025 1.1e-16 91.3 82 58.5
Zm00001eb034680 Zea mays HOM05D003424 ORTHO05D013934 9.5e-16 88.2 55 72.7
Actinidia09299 Actinidia chinensis HOM05D003424 ORTHO05D004025 2.8e-15 86.7 64 67.2
Gorai.007G170700 Gossypium raimondii HOM05D003424 ORTHO05D004025 1.3e-12 77.8 44 72.7
Gohir.A11G217200 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.9e-12 75.9 42 73.8
Gohir.D06G106300 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.9e-12 75.9 42 73.8
Gohir.D07G001450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.9e-12 75.9 42 73.8
Gohir.D07G177400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.9e-12 75.9 42 73.8
Gohir.D07G228450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.9e-12 75.9 42 73.8
Gorai.010G177900 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.4e-11 73.6 42 71.4
HanXRQChr10g0303321 Helianthus annuus HOM05D000894 ORTHO05D001833 6.6e-09 65.5 46 60.9
PSO210G7607 Papaver somniferum HOM05D006021 ORTHO05D007747 3.3e-08 63.2 43 69.8
Gohir.A09G048100 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.1e-06 58.2 32 71.9


User provided reference genes

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