Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 8.4e-63 243.4 116 100.0
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 9.7e-35 150.2 85 81.2
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.3e-34 149.8 86 82.6
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 2.2e-34 149.1 82 82.9
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 3.7e-34 148.3 83 80.7
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 8.2e-34 147.1 81 82.7
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 8.2e-34 147.1 83 81.9
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.1e-33 146.7 75 89.3
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.1e-33 146.7 76 89.5
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.8e-33 146.0 75 86.7
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.8e-33 146.0 75 88.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.8e-33 146.0 83 83.1
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.8e-33 146.0 75 89.3
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 3.1e-33 145.2 81 84.0
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 4.1e-33 144.8 75 86.7
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 5.3e-33 144.4 75 86.7
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 5.3e-33 144.4 75 88.0
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 7.0e-33 144.1 81 82.7
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 9.1e-33 143.7 75 88.0
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 9.1e-33 143.7 75 86.7
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.2e-32 143.3 75 85.3
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.2e-32 143.3 75 85.3
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.2e-32 143.3 83 78.3
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.2e-32 143.3 75 85.3
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.2e-32 143.3 79 83.5
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.5e-32 142.9 82 79.3
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 2.0e-32 142.5 75 85.3
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 2.0e-32 142.5 75 86.7
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 2.0e-32 142.5 75 86.7
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 2.6e-32 142.1 86 77.9
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 2.6e-32 142.1 75 85.3
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.6e-32 142.1 75 84.0
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.5e-32 141.7 80 81.2
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.5e-32 141.7 80 81.2
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.5e-32 141.7 82 80.5
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 84.0
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 84.0
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 4.5e-32 141.4 84 76.2
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.5e-32 141.4 80 80.0
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 86.7
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 86.7
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 85.3
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 85.3
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 4.5e-32 141.4 75 86.7
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.9e-32 141.0 80 81.2
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 5.9e-32 141.0 83 79.5
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 7.7e-32 140.6 75 82.7
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.3e-31 139.8 80 81.2
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.3e-31 139.8 75 84.0
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.3e-31 139.8 80 80.0
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 1.7e-31 139.4 90 73.3
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 2.2e-31 139.0 75 82.7
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.2e-31 139.0 75 84.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.9e-31 138.7 84 75.0
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 2.9e-31 138.7 75 80.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.9e-31 138.7 75 80.0
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 2.9e-31 138.7 75 80.0
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 3.8e-31 138.3 75 82.7
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 5.0e-31 137.9 75 82.7
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.0e-31 137.9 76 80.3
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 6.5e-31 137.5 87 73.6
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 6.5e-31 137.5 75 82.7
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 6.5e-31 137.5 75 81.3
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 6.5e-31 137.5 75 81.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 8.5e-31 137.1 74 85.1
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 8.5e-31 137.1 75 82.7
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 2.5e-30 135.6 75 80.0
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 3.2e-30 135.2 75 81.3
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 7.2e-30 134.0 75 80.0
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 9.4e-30 133.7 75 80.0
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 9.4e-30 133.7 75 80.0
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 9.4e-30 133.7 76 76.3
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 9.4e-30 133.7 75 80.0
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 1.2e-29 133.3 80 75.0
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.6e-29 132.9 80 75.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.1e-29 132.5 75 78.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.1e-29 132.5 76 77.6
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 2.1e-29 132.5 75 77.3
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.6e-29 131.7 75 77.3
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 6.1e-29 131.0 75 77.3
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.1e-29 131.0 80 77.5
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 6.1e-29 131.0 80 77.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 6.1e-29 131.0 89 69.7
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 8.0e-29 130.6 75 77.3
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.0e-28 130.2 75 76.0
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 2.3e-28 129.0 75 76.0
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 3.0e-28 128.6 75 76.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 3.0e-28 128.6 75 76.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 3.0e-28 128.6 75 76.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 5.2e-28 127.9 76 75.0
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 8.8e-28 127.1 92 67.4
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.1e-27 126.7 75 76.0
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.1e-27 126.7 75 76.0
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.0e-27 125.9 75 74.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.0e-27 125.9 75 74.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.0e-27 125.9 75 74.7
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.2e-26 122.5 80 73.8
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 2.8e-26 122.1 71 77.5
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.3e-26 120.9 58 89.7
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 6.3e-26 120.9 110 54.5
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 5.3e-25 117.9 68 82.4
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.2e-24 116.7 64 84.4
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.6e-24 115.5 69 78.3
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 4.5e-24 114.8 64 84.4
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.0e-23 113.6 74 67.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.2e-23 112.5 69 76.8
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 1.5e-22 109.8 61 82.0
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.9e-22 109.4 73 71.2
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-22 108.6 71 74.6
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 4.2e-22 108.2 71 73.2
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.2e-22 108.2 61 80.3
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.4e-22 107.1 64 76.6
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 9.4e-22 107.1 50 88.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.1e-21 105.9 61 78.7
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.1e-21 105.9 68 72.1
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.8e-20 102.8 72 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 4.0e-20 101.7 75 60.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 4.0e-20 101.7 68 69.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 6.8e-20 100.9 70 64.3
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 8.8e-20 100.5 52 80.8
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 8.8e-20 100.5 52 80.8
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 5.7e-19 97.8 61 77.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 8.3e-18 94.0 61 75.4
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 3.1e-17 92.0 49 75.5
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 3.1e-17 92.0 49 75.5
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 4.1e-17 91.7 59 71.2
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.2e-16 90.1 73 57.5
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 5.9e-16 87.8 66 62.1
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 1.1e-14 83.6 56 71.4
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 5.2e-12 74.7 35 88.6
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.2e-11 73.6 60 60.0
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.5e-11 73.2 37 75.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.8e-10 68.9 38 73.7
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 1.2e-08 63.5 71 38.0
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.6e-08 63.2 37 83.8
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 4.5e-08 61.6 39 59.0
CDE02G2468 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 8.6e-07 57.4 32 90.6


User provided reference genes

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