Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.6e-189 665.2 336 100.0
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.1e-147 526.9 336 82.7
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.2e-82 310.8 304 58.6
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.1e-82 310.1 331 56.2
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 6.2e-82 308.5 320 56.6
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 8.1e-82 308.1 298 59.4
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 5.2e-81 305.4 229 68.6
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 7.5e-80 301.6 208 76.0
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 9.9e-80 301.2 214 73.8
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.3e-79 300.8 230 69.1
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 2.9e-79 299.7 302 57.9
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 3.7e-79 299.3 210 75.7
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 3.2e-78 296.2 210 70.5
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.1e-77 293.5 260 64.6
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 2.1e-77 293.5 282 58.2
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 3.5e-77 292.7 207 72.0
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 4.6e-77 292.4 284 58.5
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 7.8e-77 291.6 210 73.3
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 7.8e-77 291.6 239 64.4
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.3e-76 290.8 316 53.2
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 1.7e-76 290.4 214 72.4
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.3e-76 290.0 198 73.2
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 3.0e-76 289.7 211 72.5
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.0e-76 289.7 195 73.3
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 3.0e-76 289.7 312 53.8
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 3.9e-76 289.3 312 53.8
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.5e-75 287.3 222 68.9
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 1.5e-75 287.3 208 70.7
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.9e-75 287.0 251 61.0
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 2.5e-75 286.6 303 58.1
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 2.5e-75 286.6 213 69.5
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.3e-75 286.2 210 71.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 3.3e-75 286.2 240 64.6
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.3e-75 285.8 209 70.8
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 4.3e-75 285.8 258 62.0
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 4.3e-75 285.8 296 56.8
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.6e-75 285.4 210 71.0
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 7.3e-75 285.0 233 67.4
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 1.6e-74 283.9 194 71.6
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.6e-74 283.9 218 67.4
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.6e-74 283.9 235 64.7
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 2.1e-74 283.5 254 61.8
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.1e-74 283.5 197 75.1
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 2.8e-74 283.1 260 61.5
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 3.6e-74 282.7 210 71.9
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 4.7e-74 282.3 209 71.3
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 4.7e-74 282.3 209 72.2
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 4.7e-74 282.3 201 70.1
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 6.2e-74 282.0 209 70.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 6.2e-74 282.0 201 69.7
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.1e-73 281.2 209 71.8
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 1.1e-73 281.2 301 55.1
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.4e-73 280.8 209 71.8
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.4e-73 280.8 288 57.6
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.4e-73 280.8 285 58.9
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.8e-73 280.4 201 70.1
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 2.4e-73 280.0 209 70.8
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 4.0e-73 279.3 210 70.0
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 4.0e-73 279.3 201 71.6
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 8.9e-73 278.1 201 72.6
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.2e-72 277.7 239 62.3
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 1.2e-72 277.7 303 56.4
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.2e-72 277.7 209 69.4
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-72 277.3 312 52.9
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.6e-72 276.6 293 55.3
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 2.6e-72 276.6 202 69.8
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 2.6e-72 276.6 196 73.0
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 3.4e-72 276.2 205 69.3
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 4.4e-72 275.8 284 55.6
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 7.6e-72 275.0 202 71.3
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 9.9e-72 274.6 209 71.8
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 9.9e-72 274.6 205 69.8
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.7e-71 273.9 174 78.2
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.9e-71 272.3 203 69.0
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 6.4e-71 271.9 284 53.2
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 8.4e-71 271.6 285 55.8
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 1.9e-70 270.4 181 75.1
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 2.4e-70 270.0 210 66.2
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.4e-70 270.0 207 70.5
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 3.2e-70 269.6 194 68.6
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 3.2e-70 269.6 230 63.0
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 4.2e-70 269.2 288 52.8
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 4.2e-70 269.2 174 77.0
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 5.4e-70 268.9 196 69.4
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 5.4e-70 268.9 196 69.4
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 7.1e-70 268.5 310 50.0
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 1.2e-69 267.7 206 69.4
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.6e-69 267.3 275 53.5
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 1.6e-69 267.3 194 68.0
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.6e-69 267.3 187 73.3
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.6e-69 267.3 232 62.5
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 1.6e-69 267.3 239 59.0
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.6e-69 267.3 166 78.9
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.6e-69 267.3 329 50.8
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 3.5e-69 266.2 275 54.2
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 4.6e-69 265.8 238 59.2
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 6.0e-69 265.4 276 54.0
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 6.0e-69 265.4 276 54.0
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 7.8e-69 265.0 297 51.2
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.8e-69 265.0 299 53.5
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 7.8e-69 265.0 279 55.6
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.0e-68 264.6 173 76.3
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 1.3e-68 264.2 294 51.7
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.7e-68 263.8 270 57.4
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 1.7e-68 263.8 326 49.7
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.7e-68 263.8 313 51.1
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.3e-68 263.5 228 64.0
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.3e-68 263.5 204 64.7
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 3.0e-68 263.1 297 52.2
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 3.0e-68 263.1 193 68.9
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 3.0e-68 263.1 218 63.3
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.3e-67 259.6 208 64.4
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 5.6e-67 258.8 365 45.5
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 9.6e-67 258.1 206 63.1
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 2.1e-66 256.9 312 48.4
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 2.1e-66 256.9 312 48.4
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 4.8e-66 255.8 148 81.1
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 6.2e-66 255.4 192 67.2
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 6.2e-66 255.4 150 81.3
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 8.1e-66 255.0 194 68.0
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 1.4e-65 254.2 182 67.6
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 5.3e-65 252.3 294 51.7
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.6e-64 250.0 174 72.4
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.4e-64 249.2 185 68.6
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.7e-63 247.3 296 49.7
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 4.9e-63 245.7 368 43.8
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 6.4e-63 245.4 193 66.3
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 8.4e-63 245.0 216 58.8
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 8.4e-63 245.0 216 58.8
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.1e-62 244.6 186 67.2
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 1.6e-61 240.7 160 74.4
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 4.3e-59 232.6 125 88.8
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.3e-58 231.1 217 57.1
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.6e-58 230.7 186 65.1
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.4e-57 227.6 140 75.7
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.0e-57 224.9 290 51.0
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.2e-56 224.6 148 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.5e-56 222.6 202 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.2e-55 220.3 185 58.4
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 1.4e-54 217.6 298 43.6
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.9e-54 217.2 259 48.6
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 1.6e-53 214.2 295 44.1
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-52 208.8 143 65.0
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.1e-49 201.4 312 44.2
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.2e-47 193.7 106 86.8
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 4.9e-47 192.6 174 61.5
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.2e-40 171.4 225 48.9
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 1.3e-39 167.9 152 63.8
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-30 137.9 86 73.3
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-30 137.9 86 73.3
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.2e-30 136.3 86 72.1
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.7e-29 133.7 75 80.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.8e-28 131.0 87 69.0
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 3.7e-26 123.2 100 67.0
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.1e-25 120.2 65 89.2
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 9.1e-25 118.6 132 42.4
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 9.1e-25 118.6 73 75.3
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 3.4e-24 116.7 104 61.5
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.5e-24 116.3 316 33.9
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.0e-23 115.2 318 32.7
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 1.4e-22 111.3 166 37.3
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.4e-20 104.8 103 59.2
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 5.7e-19 99.4 107 50.5
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.7e-19 98.6 65 70.8
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.1e-17 95.1 132 37.1
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 7.0e-17 92.4 63 61.9
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 2.3e-12 77.4 51 70.6
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 3.3e-11 73.6 43 81.4


User provided reference genes

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