Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1139 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.7e-91 338.6 165 100.0
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.6e-65 252.3 159 81.1
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 5.0e-61 238.0 122 93.4
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 3.4e-41 172.2 159 61.0
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 8.6e-37 157.5 115 68.7
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 1.1e-36 157.1 157 56.1
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 1.6e-35 153.3 140 57.1
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 3.6e-35 152.1 159 54.1
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 3.6e-35 152.1 119 68.1
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 4.7e-35 151.8 112 67.0
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 4.7e-35 151.8 119 66.4
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 6.2e-35 151.4 118 64.4
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 2.4e-34 149.4 112 66.1
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 2.4e-34 149.4 124 59.7
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 2.4e-34 149.4 154 52.6
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 3.1e-34 149.1 100 70.0
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 4.0e-34 148.7 116 64.7
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 4.0e-34 148.7 147 51.7
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 5.2e-34 148.3 96 71.9
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 5.2e-34 148.3 96 71.9
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 5.2e-34 148.3 110 65.5
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 5.2e-34 148.3 96 72.9
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 5.2e-34 148.3 115 66.1
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 6.9e-34 147.9 146 56.8
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 8.9e-34 147.5 96 71.9
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 8.9e-34 147.5 158 48.7
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 8.9e-34 147.5 96 71.9
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 1.5e-33 146.7 104 68.3
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 1.5e-33 146.7 96 71.9
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 1.5e-33 146.7 115 62.6
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 2.0e-33 146.4 148 52.0
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 2.0e-33 146.4 97 70.1
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 4.4e-33 145.2 99 70.7
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 5.8e-33 144.8 95 72.6
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 5.8e-33 144.8 95 71.6
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 5.8e-33 144.8 147 54.4
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 9.9e-33 144.1 121 60.3
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 9.9e-33 144.1 153 55.6
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 2.2e-32 142.9 96 70.8
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 3.8e-32 142.1 136 55.1
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 3.8e-32 142.1 86 72.1
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 4.9e-32 141.7 115 60.0
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.9e-32 141.7 106 63.2
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 4.9e-32 141.7 166 50.0
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 8.4e-32 141.0 129 55.8
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 1.4e-31 140.2 100 65.0
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 1.9e-31 139.8 99 67.7
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 1.9e-31 139.8 97 71.1
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 2.4e-31 139.4 114 62.3
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 5.4e-31 138.3 102 66.7
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 7.1e-31 137.9 96 64.6
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 7.1e-31 137.9 114 63.2
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.2e-30 137.1 98 67.3
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 2.1e-30 136.3 105 62.9
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 4.6e-30 135.2 107 61.7
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 7.8e-30 134.4 105 58.1
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 7.8e-30 134.4 97 66.0
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 3.0e-29 132.5 98 65.3
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.0e-29 132.5 98 65.3
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 3.9e-29 132.1 96 66.7
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 5.1e-29 131.7 96 65.6
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 5.1e-29 131.7 154 50.6
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 5.1e-29 131.7 108 60.2
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 5.1e-29 131.7 108 60.2
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 6.6e-29 131.3 88 69.3
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 1.5e-28 130.2 98 63.3
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.9e-28 129.8 96 65.6
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 1.3e-27 127.1 96 62.5
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 2.1e-27 126.3 97 60.8
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 8.1e-27 124.4 83 68.7
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 8.1e-27 124.4 125 52.0
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 1.1e-26 124.0 83 67.5
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 1.4e-26 123.6 99 61.6
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 9.0e-26 120.9 146 47.3
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 9.0e-26 120.9 146 47.3
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 3.4e-25 119.0 90 60.0
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 3.4e-25 119.0 90 61.1
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 3.4e-25 119.0 90 61.1
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 5.8e-25 118.2 79 67.1
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 2.2e-24 116.3 82 64.6
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 1.1e-23 114.0 90 58.9
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 1.1e-23 114.0 90 58.9
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 1.1e-23 114.0 90 58.9
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 1.1e-23 114.0 90 60.0
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 3.2e-23 112.5 80 63.8
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 5.4e-23 111.7 109 52.3
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 2.1e-22 109.8 82 63.4
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 1.8e-21 106.7 84 56.0
SEGI_30677 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 8.7e-21 104.4 80 63.8
SEGI_34335 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 8.7e-21 104.4 80 63.8
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 2.8e-19 99.4 81 59.3
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 1.1e-18 97.4 138 44.2
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 1.5e-17 93.6 98 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 3.4e-17 92.4 86 48.8
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 1.4e-15 87.0 72 58.3
Glyma.04G256500 Glycine max HOM05D003774 ORTHO05D009174 3.2e-15 85.9 106 48.1
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 7.1e-15 84.7 78 48.7
Pp3c17_9260 Physcomitrium patens HOM05D003774 ORTHO05D009174 3.5e-14 82.4 75 46.7
Pp3c14_5820 Physcomitrium patens HOM05D003774 ORTHO05D009174 2.3e-13 79.7 128 37.5
Os05g0429500 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D009174 5.1e-13 78.6 46 78.3
Potri.013G105634 Populus trichocarpa HOM05D003774 ORTHO05D009174 9.6e-12 74.3 95 48.4
Psat4g030840 Pisum sativum HOM05D001214 ORTHO05D001029 1.3e-08 63.9 72 43.1
Psat4g030800 Pisum sativum HOM05D001214 ORTHO05D001029 1.1e-07 60.8 72 40.3
Ca_21586_v3 Cicer arietinum L. HOM05D001214 ORTHO05D001029 2.5e-07 59.7 61 44.3
Medtr4g117380 Medicago truncatula HOM05D001214 ORTHO05D001029 2.5e-07 59.7 72 40.3
arahy.Tifrunner.gnm1.ann1.CECC7V Arachis hypogaea HOM05D001214 ORTHO05D001029 3.2e-07 59.3 62 40.3
arahy.Tifrunner.gnm1.ann1.EGQH3V Arachis hypogaea HOM05D001214 ORTHO05D001029 3.2e-07 59.3 62 40.3
Phvul.003G095100 Phaseolus vulgaris HOM05D001214 ORTHO05D001029 4.2e-07 58.9 61 41.0
Glyma.07G255900 Glycine max HOM05D001214 ORTHO05D001029 5.5e-07 58.5 60 41.7
Sopen10g008790 Solanum pennellii HOM05D001214 ORTHO05D001029 5.5e-07 58.5 75 38.7
CiPaw.01G158800 Carya illinoinensis HOM05D001214 ORTHO05D001029 7.1e-07 58.2 55 43.6
Sc13g0003870 Simmondsia chinensis HOM05D001214 ORTHO05D001029 7.1e-07 58.2 60 41.7
Glyma.17G018200 Glycine max HOM05D001214 ORTHO05D001029 9.3e-07 57.8 60 41.7
VMungo1215G0215 Vigna mungo HOM05D001214 ORTHO05D001029 9.3e-07 57.8 76 39.5
AUR62002637 Chenopodium quinoa HOM05D001214 ORTHO05D001029 1.2e-06 57.4 56 44.6
Eucgr.B01154 Eucalyptus grandis HOM05D001214 ORTHO05D001029 1.6e-06 57.0 72 36.1
Lalb_Chr12g0196251 Lupinus albus HOM05D001214 ORTHO05D001029 1.6e-06 57.0 56 44.6
GSVIVG01011089001 Vitis vinifera HOM05D001214 ORTHO05D001029 1.6e-06 57.0 86 37.2
arahy.Tifrunner.gnm1.ann1.EG1I0Q Arachis hypogaea HOM05D001214 ORTHO05D001029 2.1e-06 56.6 62 38.7
arahy.Tifrunner.gnm1.ann1.SXH817 Arachis hypogaea HOM05D001214 ORTHO05D001029 2.1e-06 56.6 62 38.7
BcaB04g20439 Brassica carinata HOM05D001214 ORTHO05D001029 2.1e-06 56.6 61 39.3
CAN.G109.3 Capsicum annuum HOM05D001214 ORTHO05D001029 2.1e-06 56.6 50 42.0
Phvul.005G150700 Phaseolus vulgaris HOM05D001214 ORTHO05D001029 2.1e-06 56.6 56 46.4
Solyc10g018850.2 Solanum lycopersicum HOM05D001214 ORTHO05D001029 2.1e-06 56.6 75 37.3
CBR_g29932 Chara braunii HOM05D003774 ORTHO05D009174 2.7e-06 56.2 110 30.0
DCAR_012171 Daucus carota HOM05D001214 ORTHO05D001029 2.7e-06 56.2 73 35.6
HanXRQChr10g0310251 Helianthus annuus HOM05D001214 ORTHO05D001029 2.7e-06 56.2 82 40.2
VMungo1215G2602 Vigna mungo HOM05D001214 ORTHO05D001029 2.7e-06 56.2 56 48.2
Gohir.A02G028400 Gossypium hirsutum HOM05D001214 ORTHO05D001029 3.5e-06 55.8 56 42.9
RcHm_v2.0_Chr1g0334471 Rosa chinensis HOM05D001214 ORTHO05D001029 3.5e-06 55.8 105 31.4
Aa31LG8G10040 Aethionema arabicum HOM05D001214 ORTHO05D001029 4.6e-06 55.5 62 40.3
CSS0047107 Camellia sinensis var. sinensis HOM05D001214 ORTHO05D001029 4.6e-06 55.5 54 44.4
Cpa.g.sc16.38 Carica papaya HOM05D001214 ORTHO05D001029 6.0e-06 55.1 56 44.6
Eucgr.B01156 Eucalyptus grandis HOM05D001214 ORTHO05D001029 6.0e-06 55.1 85 31.8
THA.LOC104808665 Tarenaya hassleriana HOM05D001214 ORTHO05D001029 6.0e-06 55.1 61 37.7
TWI73G0613 Tripterygium wilfordii HOM05D001214 ORTHO05D001029 6.0e-06 55.1 72 33.3
EL10Ac2g04248 Beta vulgaris HOM05D001214 ORTHO05D001029 7.9e-06 54.7 86 32.6
Carub.0003s2381 Capsella rubella HOM05D001214 ORTHO05D001029 7.9e-06 54.7 61 37.7
CDE11G0207 Ceratophyllum demersum HOM05D001214 ORTHO05D001029 7.9e-06 54.7 62 41.9
DCAR_018403 Daucus carota HOM05D001214 ORTHO05D001029 7.9e-06 54.7 63 41.3
Gohir.D02G036100 Gossypium hirsutum HOM05D001214 ORTHO05D001029 7.9e-06 54.7 56 41.1
Gorai.005G040200 Gossypium raimondii HOM05D001214 ORTHO05D001029 7.9e-06 54.7 56 41.1
Lj4g0007369 Lotus japonicus HOM05D001214 ORTHO05D001029 7.9e-06 54.7 61 39.3
PSO782G0322 Papaver somniferum HOM05D001214 ORTHO05D001029 7.9e-06 54.7 51 43.1
Sopen09g026380 Solanum pennellii HOM05D001214 ORTHO05D001029 7.9e-06 54.7 62 35.5
Thecc.04G220300 Theobroma cacao HOM05D001214 ORTHO05D001029 7.9e-06 54.7 85 34.1
TWI12G0478 Tripterygium wilfordii HOM05D001214 ORTHO05D001029 7.9e-06 54.7 61 36.1


User provided reference genes

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