Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.0e-179 631.7 316 100.0
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 6.8e-139 497.7 318 76.7
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.2e-138 496.9 318 76.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.0e-138 496.1 315 78.1
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.0e-138 496.1 316 76.6
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 3.4e-138 495.4 319 75.9
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.4e-138 495.4 318 76.4
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.4e-138 495.0 318 75.8
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.8e-137 492.3 316 76.6
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 4.8e-137 491.5 318 74.5
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 6.3e-137 491.1 318 75.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.4e-136 490.0 317 76.0
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.1e-136 488.4 318 74.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 4.1e-136 488.4 320 74.7
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 5.3e-136 488.0 318 74.8
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 5.3e-136 488.0 318 74.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 7.0e-136 487.6 317 74.8
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.7e-135 485.7 316 75.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 3.5e-135 485.3 317 75.4
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 4.5e-135 485.0 318 75.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.9e-135 484.6 316 74.7
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 5.9e-135 484.6 320 73.4
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.2e-134 482.6 314 74.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.2e-134 482.6 315 73.7
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.9e-134 482.3 316 74.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 8.5e-134 480.7 320 72.8
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 8.5e-134 480.7 316 72.2
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.5e-133 479.9 320 73.4
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.5e-133 479.9 318 72.6
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.9e-133 479.6 318 73.3
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.9e-133 479.6 317 73.5
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.5e-133 479.2 320 73.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.5e-133 479.2 321 73.5
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 4.2e-133 478.4 313 74.4
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 4.2e-133 478.4 316 73.1
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 4.2e-133 478.4 315 73.0
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 7.2e-133 477.6 315 74.3
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 9.4e-133 477.2 318 73.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.2e-132 476.9 316 71.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.2e-132 476.9 316 74.1
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.6e-132 476.5 316 71.2
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.6e-132 476.5 321 73.2
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.1e-132 476.1 318 72.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.1e-132 476.1 321 73.5
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.1e-132 476.1 320 72.5
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.6e-132 475.3 315 73.0
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 3.6e-132 475.3 316 70.9
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 3.6e-132 475.3 316 70.9
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 3.6e-132 475.3 321 73.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.7e-132 474.9 315 73.0
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.1e-132 474.6 316 71.5
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 6.1e-132 474.6 321 73.8
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 8.0e-132 474.2 321 74.8
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.0e-132 474.2 356 68.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 8.0e-132 474.2 321 72.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 3.0e-131 472.2 321 72.6
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 4.0e-131 471.9 307 75.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 6.8e-131 471.1 316 72.8
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.6e-130 469.2 316 72.5
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 9.8e-130 467.2 319 70.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 9.8e-130 467.2 321 70.7
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.7e-129 465.3 315 71.4
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 4.8e-129 464.9 317 73.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-129 464.5 321 70.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 8.3e-129 464.2 318 71.1
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.3e-129 464.2 319 69.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.1e-128 463.8 320 70.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.1e-128 463.8 320 70.6
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.1e-128 463.8 313 70.0
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.1e-128 463.8 319 70.5
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.4e-128 461.5 318 70.4
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 9.1e-128 460.7 319 69.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 4.5e-127 458.4 320 70.0
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 7.7e-127 457.6 290 83.8
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 7.7e-127 457.6 319 70.2
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-126 457.2 354 64.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.7e-126 456.4 319 70.8
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.3e-126 456.1 334 67.4
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.3e-126 456.1 355 64.5
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 5.0e-126 454.9 304 72.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.9e-125 453.0 318 71.1
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.9e-125 453.0 309 72.2
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 3.3e-125 452.2 318 69.8
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.0e-124 447.6 334 66.8
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.3e-123 446.0 311 71.4
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 3.0e-123 445.7 311 71.4
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 6.8e-123 444.5 316 69.6
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 6.8e-123 444.5 358 61.7
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.3e-121 440.3 387 61.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 6.3e-121 438.0 317 68.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.6e-119 433.3 315 67.9
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 5.9e-119 431.4 305 70.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.5e-117 426.0 318 66.0
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-116 422.5 316 66.5
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 4.4e-114 415.2 318 66.7
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.4e-112 409.5 323 63.8
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.6e-111 406.8 310 65.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.7e-111 406.0 324 61.1
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.7e-110 403.3 250 77.2
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 3.3e-109 399.1 323 61.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 3.6e-108 395.6 250 77.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 4.4e-106 388.7 243 76.1
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 7.5e-106 387.9 247 75.3
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 5.4e-104 381.7 248 72.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 3.9e-102 375.6 318 62.9
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 6.2e-100 368.2 315 61.3
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.3e-93 345.9 244 68.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.3e-93 345.5 304 58.9
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.6e-90 336.3 357 53.8
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.1e-83 314.3 308 55.2
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 3.1e-83 312.8 196 79.1
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 7.8e-79 298.1 234 64.1
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 6.0e-63 245.4 323 42.4
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 3.7e-60 236.1 134 80.6
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 4.8e-60 235.7 205 61.0
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.1e-59 234.6 138 79.7
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 6.9e-59 231.9 192 62.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.0e-57 228.0 263 47.1
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.1e-56 224.6 127 82.7
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 4.2e-56 222.6 275 48.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 9.0e-51 204.9 157 61.8
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.1e-31 139.0 113 57.5
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.8e-30 137.5 113 56.6
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.3e-30 137.1 109 62.4
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-29 134.0 163 46.6
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.3e-29 133.3 113 54.9
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.7e-29 131.7 106 56.6
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.7e-29 131.7 106 56.6
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-28 131.0 119 52.9
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.1e-27 128.3 106 54.7
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 5.3e-27 125.9 97 64.9
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 8.5e-25 118.6 192 41.1
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 9.4e-24 115.2 73 71.2
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 5.2e-22 109.4 77 67.5
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.5e-18 96.7 81 55.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 7.2e-16 89.0 187 35.8
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.7e-15 86.3 57 73.7
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.4e-14 84.7 59 74.6
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 2.0e-13 80.9 69 60.9
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.8e-11 74.3 61 55.7
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 2.4e-11 73.9 66 50.0
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 2.4e-11 73.9 205 29.3
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 4.5e-10 69.7 59 59.3
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.0e-09 68.6 66 48.5
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.9e-08 64.3 51 52.9
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 7.2e-08 62.4 50 56.0
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 7.2e-08 62.4 37 73.0
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 8.0e-07 58.9 54 55.6


User provided reference genes

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