Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1131 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 5.9e-89 330.9 170 100.0
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 1.1e-47 193.7 168 58.9
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 1.9e-47 193.0 168 59.5
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 9.5e-47 190.7 168 59.5
CiPaw.07G095900 Carya illinoinensis HOM05D002930 ORTHO05D003283 2.8e-46 189.1 167 59.3
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.8e-46 189.1 168 56.5
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 3.6e-46 188.7 168 58.3
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 4.7e-46 188.3 167 58.7
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 8.0e-46 187.6 168 58.3
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 1.0e-45 187.2 168 57.1
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 1.0e-45 187.2 168 58.3
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.3e-45 186.0 168 56.0
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 3.1e-45 185.7 168 54.2
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 6.8e-45 184.5 168 56.0
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.2e-44 183.7 168 55.4
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.2e-44 183.7 168 55.4
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 1.5e-44 183.3 168 58.3
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 1.5e-44 183.3 167 56.9
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 1.5e-44 183.3 167 56.9
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 1.5e-44 183.3 168 55.4
Psat6g169880 Pisum sativum HOM05D002930 ORTHO05D003283 2.6e-44 182.6 168 55.4
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 1.3e-43 180.3 168 56.5
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 1.3e-43 180.3 168 54.8
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 1.3e-43 180.3 167 56.3
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.7e-43 179.9 167 53.3
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 1.7e-43 179.9 167 56.3
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 1.7e-43 179.9 167 56.3
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 2.2e-43 179.5 167 56.3
HPP92_017200 Vanilla planifolia HOM05D002930 ORTHO05D003283 2.2e-43 179.5 166 54.8
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 2.2e-43 179.5 168 56.5
HPP92_027329 Vanilla planifolia HOM05D002930 ORTHO05D003283 3.7e-43 178.7 164 55.5
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 4.9e-43 178.3 168 53.0
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 4.9e-43 178.3 168 55.4
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 4.9e-43 178.3 166 56.0
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 6.4e-43 177.9 168 53.6
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 6.4e-43 177.9 168 55.4
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 8.3e-43 177.6 168 54.8
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 1.1e-42 177.2 165 52.7
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 1.4e-42 176.8 167 55.7
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 1.9e-42 176.4 170 51.2
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 1.9e-42 176.4 169 54.4
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 4.1e-42 175.3 169 53.3
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 4.1e-42 175.3 168 56.0
Aqoxy211s001 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 5.4e-42 174.9 161 57.8
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 5.4e-42 174.9 161 57.8
Gohir.D05G174300 Gossypium hirsutum HOM05D002930 ORTHO05D003283 5.4e-42 174.9 165 53.3
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 5.4e-42 174.9 167 53.9
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 7.0e-42 174.5 166 53.6
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 9.2e-42 174.1 168 53.0
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 1.2e-41 173.7 160 53.8
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 1.6e-41 173.3 168 52.4
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 1.6e-41 173.3 170 55.3
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 1.6e-41 173.3 168 51.8
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 2.0e-41 172.9 168 54.2
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 3.5e-41 172.2 168 54.8
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 4.6e-41 171.8 166 55.4
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 4.6e-41 171.8 169 54.4
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 6.0e-41 171.4 169 52.1
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 7.8e-41 171.0 160 55.6
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 7.8e-41 171.0 173 50.3
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 7.8e-41 171.0 168 51.8
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 1.3e-40 170.2 168 53.6
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 3.9e-40 168.7 160 54.4
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 5.0e-40 168.3 168 52.4
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 8.6e-40 167.5 169 50.9
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 1.1e-39 167.2 166 47.6
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 1.1e-39 167.2 168 50.6
MBI19_g21638_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 1.1e-39 167.2 232 44.0
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 1.1e-39 167.2 164 54.3
Gohir.D13G110101 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.5e-39 166.8 161 53.4
Lalb_Chr04g0260851 Lupinus albus HOM05D002930 ORTHO05D003283 1.9e-39 166.4 169 52.1
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 3.3e-39 165.6 169 50.9
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 3.3e-39 165.6 168 50.0
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 3.3e-39 165.6 168 52.4
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 3.3e-39 165.6 168 48.8
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.3e-39 165.2 161 52.8
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 4.3e-39 165.2 173 48.0
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 4.3e-39 165.2 169 50.3
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 5.6e-39 164.9 167 52.7
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 5.6e-39 164.9 165 52.1
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 5.6e-39 164.9 164 53.0
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 5.6e-39 164.9 161 52.8
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 7.3e-39 164.5 168 51.2
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 7.3e-39 164.5 168 52.4
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 9.5e-39 164.1 168 51.8
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 9.5e-39 164.1 168 51.8
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.6e-38 163.3 162 51.9
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 2.1e-38 162.9 168 51.2
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 2.8e-38 162.5 162 51.2
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 4.7e-38 161.8 168 50.0
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 4.7e-38 161.8 168 50.6
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 6.2e-38 161.4 161 50.9
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 1.1e-37 160.6 168 50.0
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 1.1e-37 160.6 168 49.4
Gorai.012G158000 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.1e-37 160.6 165 53.3
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 1.4e-37 160.2 168 48.2
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 2.3e-37 159.5 168 49.4
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 2.3e-37 159.5 168 49.4
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 2.3e-37 159.5 168 50.6
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 3.1e-37 159.1 165 50.9
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 4.0e-37 158.7 164 50.6
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 6.8e-37 157.9 168 50.6
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 6.8e-37 157.9 168 48.8
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 8.9e-37 157.5 168 50.0
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 8.9e-37 157.5 165 50.3
DCAR_012455 Daucus carota HOM05D002930 ORTHO05D003283 1.2e-36 157.1 162 51.2
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 1.2e-36 157.1 168 49.4
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 1.5e-36 156.8 175 47.4
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 2.6e-36 156.0 168 48.8
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 2.6e-36 156.0 168 48.8
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 3.4e-36 155.6 164 51.2
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 3.4e-36 155.6 168 50.6
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 7.5e-36 154.5 166 45.8
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 1.3e-35 153.7 162 49.4
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 4.1e-34 148.7 170 47.6
Gohir.A08G185020 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.1e-33 146.4 116 61.2
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 2.1e-33 146.4 162 45.7
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 2.7e-33 146.0 115 61.7
Gorai.008G067700 Gossypium raimondii HOM05D002930 ORTHO05D003283 7.8e-33 144.4 123 57.7
Gohir.D10G213350 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.0e-32 142.5 116 60.3
Gohir.D02G096000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.9e-32 142.1 116 60.3
Gorai.005G109700 Gossypium raimondii HOM05D002930 ORTHO05D003283 3.9e-32 142.1 116 59.5
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 1.1e-29 134.0 116 56.0
SHI15440 Sapria himalayana HOM05D002930 ORTHO05D003283 3.1e-29 132.5 113 60.2
Gohir.D01G034401 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.4e-28 128.6 113 56.6
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 1.7e-27 126.7 166 41.6
Gorai.009G179600 Gossypium raimondii HOM05D002930 ORTHO05D003283 3.2e-26 122.5 105 59.0
Gohir.D04G169700 Gossypium hirsutum HOM05D002930 ORTHO05D003283 5.1e-24 115.2 97 56.7
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.5e-20 103.6 162 42.6
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.5e-20 103.6 162 37.0
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 2.4e-18 96.3 161 36.6
QL03p004191 Quercus lobata HOM05D002930 ORTHO05D003283 5.4e-18 95.1 119 46.2
Gohir.A07G059600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 9.3e-18 94.4 78 57.7
Gohir.D07G116100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 9.3e-18 94.4 78 57.7
Gohir.D10G155925 Gossypium hirsutum HOM05D002930 ORTHO05D003283 9.3e-18 94.4 78 57.7
Gorai.013G151200 Gossypium raimondii HOM05D002930 ORTHO05D003283 9.3e-18 94.4 78 57.7
Gohir.D01G193850 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.6e-17 93.6 80 56.2
Gohir.D07G104000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.6e-17 93.6 78 57.7
Gohir.D04G075400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.1e-17 93.2 78 57.7
Gorai.001G179200 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.1e-17 93.2 78 56.4
QL03p004772 Quercus lobata HOM05D002930 ORTHO05D003283 7.8e-17 91.3 100 50.0
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.7e-16 90.1 160 31.9
Gohir.D11G258550 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.3e-16 89.7 78 53.8
Gorai.007G276800 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.3e-16 89.7 78 53.8
Gohir.D11G053151 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.9e-16 89.0 74 56.8
Gohir.D02G064100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 8.7e-16 87.8 74 55.4
Gohir.D06G133100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.3e-14 84.0 78 53.8
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.7e-11 73.6 147 31.3
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 4.9e-11 72.0 71 49.3
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 1.8e-08 63.5 166 30.7
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 6.2e-06 55.1 164 26.8


User provided reference genes

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