Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1124 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 1.5e-98 362.8 181 100.0
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 1.7e-54 216.5 188 59.6
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 6.5e-54 214.5 187 58.8
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 6.5e-54 214.5 187 59.9
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 1.9e-53 213.0 184 58.7
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 7.2e-53 211.1 181 60.2
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 9.4e-53 210.7 187 58.8
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 9.4e-53 210.7 181 60.8
Nitab4.5_0005845g0040 Nicotiana tabacum HOM05D001607 ORTHO05D001893 9.4e-53 210.7 183 59.0
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.6e-52 209.9 187 58.3
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.6e-52 209.9 188 58.5
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.6e-52 209.9 181 60.2
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 2.1e-52 209.5 187 58.3
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.1e-52 209.5 187 58.3
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.1e-52 209.5 187 58.3
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 2.1e-52 209.5 188 55.9
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 3.6e-52 208.8 185 58.9
Gohir.D08G110708 Gossypium hirsutum HOM05D001607 ORTHO05D001893 3.6e-52 208.8 188 57.4
Gorai.004G118400 Gossypium raimondii HOM05D001607 ORTHO05D001893 3.6e-52 208.8 188 57.4
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 4.7e-52 208.4 188 58.5
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 6.1e-52 208.0 187 57.2
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.0e-52 207.6 187 57.8
Peaxi162Scf00444g00722 Petunia axillaris HOM05D001607 ORTHO05D001893 8.0e-52 207.6 183 58.5
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.0e-51 207.2 188 56.9
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 1.0e-51 207.2 184 58.2
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.4e-51 206.8 187 57.8
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.8e-51 206.5 187 58.3
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 1.8e-51 206.5 181 60.2
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 1.8e-51 206.5 182 61.5
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 2.3e-51 206.1 188 58.0
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 3.0e-51 205.7 181 57.5
CAN.G307.23 Capsicum annuum HOM05D001607 ORTHO05D001893 5.2e-51 204.9 183 57.9
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 6.8e-51 204.5 186 55.9
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 8.8e-51 204.1 188 57.4
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 1.2e-50 203.8 185 57.8
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 1.2e-50 203.8 181 60.2
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 1.5e-50 203.4 181 55.8
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 2.0e-50 203.0 181 59.7
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 2.0e-50 203.0 184 59.2
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 4.4e-50 201.8 181 55.8
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 4.4e-50 201.8 181 58.6
Cpa.g.sc107.64 Carica papaya HOM05D001607 ORTHO05D001893 5.7e-50 201.4 181 59.1
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 5.7e-50 201.4 184 57.1
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 7.5e-50 201.1 189 56.6
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 7.5e-50 201.1 184 56.0
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 7.5e-50 201.1 181 55.8
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 9.8e-50 200.7 184 55.4
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 1.7e-49 199.9 187 55.1
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 1.7e-49 199.9 181 55.8
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 2.2e-49 199.5 193 54.4
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 2.8e-49 199.1 188 55.9
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 2.8e-49 199.1 184 56.5
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 3.7e-49 198.7 187 55.1
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 4.8e-49 198.4 181 55.8
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 4.8e-49 198.4 182 58.2
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 1.1e-48 197.2 181 56.9
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 1.1e-48 197.2 196 54.1
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 1.1e-48 197.2 181 54.7
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 1.4e-48 196.8 204 54.4
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 2.4e-48 196.1 188 53.2
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 2.4e-48 196.1 187 53.5
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 3.1e-48 195.7 188 54.8
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 3.1e-48 195.7 191 55.0
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 4.1e-48 195.3 183 57.4
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 5.4e-48 194.9 201 52.2
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 5.4e-48 194.9 200 52.5
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 7.0e-48 194.5 182 54.4
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 9.1e-48 194.1 189 54.5
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 1.6e-47 193.4 191 56.5
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 1.6e-47 193.4 181 58.6
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.0e-47 193.0 181 54.1
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 2.7e-47 192.6 191 53.4
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.7e-47 192.6 181 53.6
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 4.5e-47 191.8 184 54.3
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 5.9e-47 191.4 189 52.9
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 1.0e-46 190.7 181 55.8
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 1.3e-46 190.3 187 55.1
Psat0s3405g0080 Pisum sativum HOM05D001607 ORTHO05D001893 1.3e-46 190.3 188 52.7
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.7e-46 189.9 181 56.4
THA.LOC104824860 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.3e-46 189.5 181 55.8
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 2.9e-46 189.1 171 56.7
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 3.8e-46 188.7 181 55.2
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 5.0e-46 188.3 189 53.4
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 6.6e-46 188.0 181 55.8
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 2.5e-45 186.0 181 53.6
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 2.5e-45 186.0 199 50.8
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 3.3e-45 185.7 200 49.0
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 3.3e-45 185.7 181 52.5
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 4.2e-45 185.3 181 54.1
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 7.2e-45 184.5 189 53.4
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 1.2e-44 183.7 181 55.2
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 2.1e-44 183.0 181 55.2
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 6.1e-44 181.4 181 55.2
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 8.0e-44 181.0 181 51.4
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 1.8e-43 179.9 181 53.0
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 1.8e-43 179.9 181 54.7
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 1.8e-43 179.9 181 52.5
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 1.8e-43 179.9 181 54.7
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 3.0e-43 179.1 181 53.6
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 3.0e-43 179.1 181 53.6
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 4.0e-43 178.7 180 52.8
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 6.8e-43 177.9 181 53.6
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 6.8e-43 177.9 185 53.5
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 6.8e-43 177.9 181 53.6
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 6.8e-43 177.9 181 53.6
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 1.2e-42 177.2 181 50.3
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 1.5e-42 176.8 185 53.0
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 2.0e-42 176.4 189 50.3
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 3.4e-42 175.6 181 54.7
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 3.4e-42 175.6 181 54.7
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 7.5e-42 174.5 181 54.1
Ca_27533_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 1.3e-41 173.7 168 51.2
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 1.7e-41 173.3 180 49.4
BcaNung04147 Brassica carinata HOM05D001607 ORTHO05D001893 2.8e-41 172.6 181 53.0
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 8.3e-41 171.0 181 52.5
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 8.3e-41 171.0 182 51.1
Solyc03g025630.3 Solanum lycopersicum HOM05D001607 ORTHO05D001893 7.0e-40 167.9 143 61.5
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 2.7e-39 166.0 181 48.6
unitig_46.g18793 Utricularia gibba HOM05D001607 ORTHO05D001893 2.7e-39 166.0 146 61.0
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 2.5e-37 159.5 182 49.5
Hund04843 Selenicereus undatus HOM05D001607 ORTHO05D001893 7.3e-37 157.9 143 55.9
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 6.1e-36 154.8 207 42.0
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 1.8e-35 153.3 167 52.1
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 9.8e-34 147.5 166 50.0
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 1.9e-32 143.3 218 39.4
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 2.7e-31 139.4 192 40.6
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 7.8e-31 137.9 255 35.7
vmacro06667 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 3.0e-30 136.0 131 55.7
QL09p013882 Quercus lobata HOM05D001607 ORTHO05D001893 1.5e-29 133.7 104 62.5
arahy.Tifrunner.gnm1.ann1.7UXB07 Arachis hypogaea HOM05D001607 ORTHO05D001893 1.9e-29 133.3 113 59.3
BcaNung05685 Brassica carinata HOM05D001607 ORTHO05D001893 1.8e-27 126.7 181 42.0
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 2.3e-27 126.3 181 42.5
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 1.5e-26 123.6 181 38.7
arahy.Tifrunner.gnm1.ann1.B9FIPF Arachis hypogaea HOM05D001607 ORTHO05D001893 1.3e-25 120.6 107 57.0
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 1.2e-23 114.0 129 48.1
SEGI_36427 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 3.5e-23 112.5 139 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 1.5e-21 107.1 247 30.8
COL.COLO4_14279 Corchorus olitorius HOM05D000257 ORTHO05D009129 1.5e-13 80.5 53 67.9
MD07G1272200 Malus domestica HOM05D001607 ORTHO05D001893 2.1e-12 76.6 64 53.1
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 2.4e-11 73.2 85 47.1
Sopen03g004440 Solanum pennellii HOM05D001607 ORTHO05D001893 4.0e-11 72.4 67 55.2
MELO3C034501.2 Cucumis melo HOM05D001607 ORTHO05D001893 5.8e-10 68.6 58 56.9
PRCOL_00005219 Prasinoderma coloniale HOM05D001607 ORTHO05D001893 4.9e-09 65.5 174 28.2
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 2.1e-07 60.1 97 36.1
PGSC0003DMG400019983 Solanum tuberosum HOM05D001607 ORTHO05D000214 2.7e-07 59.7 42 61.9
SHI13772 Sapria himalayana HOM05D001607 ORTHO05D001893 7.8e-07 58.2 65 50.8


User provided reference genes

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