Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1101 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 1.0e-190 669.8 332 100.0
CDE02G2550 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 2.1e-151 539.3 303 87.8
PGR004G0836 Punica granatum HOM05D003804 ORTHO05D004350 2.6e-101 372.9 311 59.2
TAR636G0278 Trochodendron aralioides HOM05D003804 ORTHO05D004350 3.8e-100 369.0 311 61.1
MBI10_g37182_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 1.1e-99 367.5 314 59.6
Lj1g0028056 Lotus japonicus HOM05D003804 ORTHO05D004350 1.9e-99 366.7 311 59.8
MD04G1232600 Malus domestica HOM05D003804 ORTHO05D004350 7.2e-99 364.8 309 61.5
GSVIVG01023535001 Vitis vinifera HOM05D003804 ORTHO05D004350 7.2e-99 364.8 312 59.9
COL.COLO4_15533 Corchorus olitorius HOM05D003804 ORTHO05D004350 3.6e-98 362.5 311 58.5
MBI07_g30495_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 6.1e-98 361.7 314 59.9
arahy.Tifrunner.gnm1.ann1.PMT11X Arachis hypogaea HOM05D003804 ORTHO05D004350 6.7e-97 358.2 312 58.7
Psat0s3161g0200 Pisum sativum HOM05D003804 ORTHO05D004350 1.1e-96 357.5 312 59.6
CSS0040175 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 2.0e-96 356.7 313 59.4
CSS0050159 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 2.0e-96 356.7 312 59.6
Cpa.g.sc51.6 Carica papaya HOM05D003804 ORTHO05D004350 2.6e-96 356.3 309 56.3
CSS0024163 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 9.7e-96 354.4 312 59.3
Glyma.03G249500 Glycine max HOM05D003804 ORTHO05D004350 9.7e-96 354.4 312 58.3
Ciclev10031149m.g Citrus clementina HOM05D003804 ORTHO05D004350 2.8e-95 352.8 313 56.9
QL03p029246 Quercus lobata HOM05D003804 ORTHO05D004350 2.8e-95 352.8 311 58.5
MD12G1250100 Malus domestica HOM05D003804 ORTHO05D004350 6.3e-95 351.7 310 58.4
Dinv08268 Davidia involucrata HOM05D003804 ORTHO05D004350 1.1e-94 350.9 311 58.2
Glyma.19G247000 Glycine max HOM05D003804 ORTHO05D004350 1.1e-94 350.9 312 57.7
PSO063G7164 Papaver somniferum HOM05D003804 ORTHO05D004350 1.4e-94 350.5 312 57.7
Duzib177G0700 Durio zibethinus HOM05D003804 ORTHO05D004350 1.8e-94 350.1 311 58.8
Thecc.05G266900 Theobroma cacao HOM05D003804 ORTHO05D004350 1.8e-94 350.1 307 58.3
FAN09G3890 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.1e-94 349.4 311 58.5
arahy.Tifrunner.gnm1.ann1.A208ZV Arachis hypogaea HOM05D003804 ORTHO05D004350 6.9e-94 348.2 335 54.9
Cc02_g08970 Coffea canephora HOM05D003804 ORTHO05D004350 6.9e-94 348.2 311 56.6
Medtr7g115460 Medicago truncatula HOM05D003804 ORTHO05D004350 6.9e-94 348.2 312 58.0
PSO017G7263 Papaver somniferum HOM05D003804 ORTHO05D004350 6.9e-94 348.2 312 56.7
Prupe.6G352300 Prunus persica HOM05D003804 ORTHO05D004350 6.9e-94 348.2 311 58.8
Cfa006383 Carpinus fangiana HOM05D003804 ORTHO05D004350 1.2e-93 347.4 302 58.6
Potri.013G049100 Populus trichocarpa HOM05D003804 ORTHO05D004350 2.0e-93 346.7 312 56.7
FAN02G4114 Fragaria x ananassa HOM05D003804 ORTHO05D004350 4.5e-93 345.5 310 58.1
FAN05G4825 Fragaria x ananassa HOM05D003804 ORTHO05D004350 4.5e-93 345.5 310 57.7
Phvul.006G104100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 4.5e-93 345.5 312 57.1
TPR.G6978 Trifolium pratense HOM05D003804 ORTHO05D004350 4.5e-93 345.5 312 58.7
Lalb_Chr06g0168201 Lupinus albus HOM05D003804 ORTHO05D004350 1.3e-92 344.0 312 56.1
RcHm_v2.0_Chr3g0449231 Rosa chinensis HOM05D003804 ORTHO05D004350 1.3e-92 344.0 310 57.7
Aqoxy2G03639 Aquilegia oxysepala HOM05D003804 ORTHO05D004350 1.7e-92 343.6 311 55.6
VMungo0540G0271 Vigna mungo HOM05D003804 ORTHO05D004350 1.7e-92 343.6 311 56.9
Duzib106G1801 Durio zibethinus HOM05D003804 ORTHO05D004350 2.2e-92 343.2 311 57.2
FAN14G2706 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.2e-92 343.2 310 57.7
FvH4_6g01530 Fragaria vesca HOM05D003804 ORTHO05D004350 2.9e-92 342.8 310 57.7
FAN14G4672 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.9e-92 342.8 310 57.7
TPR.G26623 Trifolium pratense HOM05D003804 ORTHO05D004350 2.9e-92 342.8 311 56.3
Dinv14606 Davidia involucrata HOM05D003804 ORTHO05D004350 3.8e-92 342.4 311 57.2
FAN05G4636 Fragaria x ananassa HOM05D003804 ORTHO05D004350 5.0e-92 342.0 310 57.7
Haze_04395 Corylus avellana HOM05D003804 ORTHO05D004350 6.5e-92 341.7 312 56.4
CiPaw.07G070900 Carya illinoinensis HOM05D003804 ORTHO05D004350 1.4e-91 340.5 312 57.7
Peaxi162Scf00015g03111 Petunia axillaris HOM05D003804 ORTHO05D004350 2.1e-90 336.7 311 55.9
Lj5g0014193 Lotus japonicus HOM05D003804 ORTHO05D004350 2.7e-90 336.3 311 56.3
Lalb_Chr04g0262141 Lupinus albus HOM05D003804 ORTHO05D004350 2.7e-90 336.3 307 57.7
Gohir.A13G161600 Gossypium hirsutum HOM05D003804 ORTHO05D004350 3.6e-90 335.9 311 56.6
ECA233G2677 Erigeron canadensis HOM05D003804 ORTHO05D004350 4.7e-90 335.5 312 57.4
HanXRQChr08g0225481 Helianthus annuus HOM05D003804 ORTHO05D004350 4.7e-90 335.5 312 58.3
Medtr1g080460 Medicago truncatula HOM05D003804 ORTHO05D004350 4.7e-90 335.5 311 55.3
Ca_10028_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 6.1e-90 335.1 311 55.3
Gohir.D13G172400 Gossypium hirsutum HOM05D003804 ORTHO05D004350 8.0e-90 334.7 311 55.6
Gorai.013G188300 Gossypium raimondii HOM05D003804 ORTHO05D004350 1.0e-89 334.3 311 55.6
Sabra13G0045400 Salix brachista HOM05D003804 ORTHO05D004350 1.0e-89 334.3 311 55.3
Lsat_1_v5_gn_8_2841 Lactuca sativa HOM05D003804 ORTHO05D004350 3.0e-89 332.8 309 58.3
CAN.G1465.5 Capsicum annuum HOM05D003804 ORTHO05D004350 8.8e-89 331.3 311 56.6
ATR0801G001 Amborella trichopoda HOM05D003804 ORTHO05D004350 1.5e-88 330.5 296 56.4
CANSAT56G0982 Cannabis sativa HOM05D003804 ORTHO05D004350 2.6e-88 329.7 308 57.8
Rhsim09G0137900 Rhododendron simsii HOM05D003804 ORTHO05D004350 3.3e-88 329.3 312 56.4
Peaxi162Scf00135g00416 Petunia axillaris HOM05D003804 ORTHO05D004350 5.7e-88 328.6 310 54.8
SalBow3G4606 Salvia bowleyana HOM05D003804 ORTHO05D004350 5.7e-88 328.6 312 57.1
Psat6g144120 Pisum sativum HOM05D003804 ORTHO05D004350 9.7e-88 327.8 310 53.9
CSS0006152 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 2.2e-87 326.6 312 56.4
Solyc04g009920.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 2.2e-87 326.6 311 55.0
Sopen04g005060 Solanum pennellii HOM05D003804 ORTHO05D004350 2.2e-87 326.6 311 55.0
Thhalv10020458m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 2.8e-87 326.2 312 52.6
PGSC0003DMG400023500 Solanum tuberosum HOM05D003804 ORTHO05D004350 2.8e-87 326.2 311 55.3
Manes.08G141400 Manihot esculenta HOM05D003804 ORTHO05D004350 4.8e-87 325.5 308 54.2
Solyc05g055040.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 4.8e-87 325.5 310 55.5
EL10Ac4g09070 Beta vulgaris HOM05D003804 ORTHO05D004350 6.3e-87 325.1 306 54.9
MSTRG.27378 Avicennia marina HOM05D003804 ORTHO05D004350 8.2e-87 324.7 312 55.4
Sopen05g033500 Solanum pennellii HOM05D003804 ORTHO05D004350 8.2e-87 324.7 310 55.2
Nitab4.5_0003768g0060 Nicotiana tabacum HOM05D003804 ORTHO05D004350 1.4e-86 323.9 319 53.3
Rhsim05G0175100 Rhododendron simsii HOM05D003804 ORTHO05D004350 1.8e-86 323.6 311 55.0
Migut.F00805 Erythranthe guttata HOM05D003804 ORTHO05D004350 2.4e-86 323.2 312 54.2
Ah.06g191850 Amaranthus hybridus HOM05D003804 ORTHO05D004350 3.1e-86 322.8 299 54.8
AUR62004854 Chenopodium quinoa HOM05D003804 ORTHO05D004350 3.1e-86 322.8 310 53.9
HanXRQChr07g0194371 Helianthus annuus HOM05D003804 ORTHO05D004350 3.1e-86 322.8 312 55.8
Nitab4.5_0001372g0080 Nicotiana tabacum HOM05D003804 ORTHO05D004350 4.1e-86 322.4 311 55.6
CAN.G1609.2 Capsicum annuum HOM05D003804 ORTHO05D004350 5.3e-86 322.0 310 54.2
AUR62040937 Chenopodium quinoa HOM05D003804 ORTHO05D004350 7.0e-86 321.6 309 54.0
ECA238G1424 Erigeron canadensis HOM05D003804 ORTHO05D004350 7.0e-86 321.6 312 55.4
PGSC0003DMG400011479 Solanum tuberosum HOM05D003804 ORTHO05D004350 7.0e-86 321.6 311 54.3
TWI32G1243 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 7.0e-86 321.6 311 55.0
Nitab4.5_0001268g0010 Nicotiana tabacum HOM05D003804 ORTHO05D004350 1.2e-85 320.9 310 53.2
THA.LOC104827281 Tarenaya hassleriana HOM05D003804 ORTHO05D004350 1.6e-85 320.5 311 53.4
TWI60G0892 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 1.6e-85 320.5 312 53.5
SGA_v2.0_scaffold111G31426 Striga asiatica HOM05D003804 ORTHO05D004350 3.5e-85 319.3 313 54.6
Lj2A40T58 Lonicera japonica HOM05D003804 ORTHO05D004350 7.7e-85 318.2 335 51.9
VMungo0720G0320 Vigna mungo HOM05D003804 ORTHO05D004350 2.2e-84 316.6 310 54.2
Glyma.20G226800 Glycine max HOM05D003804 ORTHO05D004350 3.8e-84 315.8 309 52.8
Phvul.007G116100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 6.5e-84 315.1 308 51.9
BcaC09g47809 Brassica carinata HOM05D003804 ORTHO05D004350 1.1e-83 314.3 311 51.4
Sed0002107 Sechium edule HOM05D003804 ORTHO05D004350 1.5e-83 313.9 313 53.4
Sp3g03220 Schrenkiella parvula HOM05D003804 ORTHO05D004350 2.5e-83 313.2 311 50.8
Carub.0003s0354 Capsella rubella HOM05D003804 ORTHO05D004350 3.2e-83 312.8 311 50.8
CARHR078510 Cardamine hirsuta HOM05D003804 ORTHO05D004350 5.5e-83 312.0 311 50.2
A01p40890 Brassica napus HOM05D003804 ORTHO05D004350 9.4e-83 311.2 312 51.0
BNapus_Darmor_BZH_scaffold_78p00820 Brassica napus HOM05D003804 ORTHO05D004350 9.4e-83 311.2 312 51.0
ClCG11G010310 Citrullus lanatus HOM05D003804 ORTHO05D004350 9.4e-83 311.2 313 52.7
BolC1t05753H Brassica oleracea HOM05D003804 ORTHO05D004350 1.6e-82 310.5 312 51.3
Aa31LG5G14820 Aethionema arabicum HOM05D003804 ORTHO05D004350 2.1e-82 310.1 312 50.6
Sed0018274 Sechium edule HOM05D003804 ORTHO05D004350 8.0e-82 308.1 309 53.1
BraA01t04524Z Brassica rapa HOM05D003804 ORTHO05D004350 1.4e-81 307.4 312 50.3
Thhalv10013196m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 2.3e-81 306.6 312 54.2
BcaNung04819 Brassica carinata HOM05D003804 ORTHO05D004350 3.0e-81 306.2 311 49.8
CsaV3_2G010010 Cucumis sativus L. HOM05D003804 ORTHO05D004350 3.0e-81 306.2 311 53.1
Oeu012230.1 Olea europaea HOM05D003804 ORTHO05D004350 3.0e-81 306.2 310 52.6
Nitab4.5_0000687g0070 Nicotiana tabacum HOM05D006502 ORTHO05D004350 1.2e-80 304.3 340 49.7
Gohir.A11G244900 Gossypium hirsutum HOM05D003804 ORTHO05D004350 2.6e-80 303.1 311 53.4
DCAR_023877 Daucus carota HOM05D003804 ORTHO05D004350 3.3e-80 302.8 312 52.6
Actinidia40003 Actinidia chinensis HOM05D003804 ORTHO05D004350 1.1e-78 297.7 276 56.9
Sp6g25840 Schrenkiella parvula HOM05D003804 ORTHO05D004350 1.1e-78 297.7 313 53.4
arahy.Tifrunner.gnm1.ann1.Y446PZ Arachis hypogaea HOM05D003804 ORTHO05D004350 1.2e-77 294.3 330 47.9
arahy.Tifrunner.gnm1.ann1.Y4X76M Arachis hypogaea HOM05D003804 ORTHO05D004350 1.2e-77 294.3 324 49.1
Ca_09447_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 2.0e-77 293.5 267 57.7
CARHR194530 Cardamine hirsuta HOM05D003804 ORTHO05D004350 1.0e-76 291.2 311 53.1
Aa31LG11G11120 Aethionema arabicum HOM05D003804 ORTHO05D004350 1.9e-75 287.0 313 50.8
Sc09g0004190 Simmondsia chinensis HOM05D003804 ORTHO05D004350 1.9e-75 287.0 266 55.6
SEGI_36765 Sequoiadendron giganteum HOM05D003804 ORTHO05D004350 2.5e-75 286.6 301 49.5
AL6G29740 Arabidopsis lyrata HOM05D003804 ORTHO05D004350 4.2e-75 285.8 313 51.8
AT5G18480 Arabidopsis thaliana HOM05D003804 ORTHO05D004350 4.2e-75 285.8 313 52.1
Os02g0624400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 4.2e-75 285.8 314 51.9
Zm00001eb426690 Zea mays HOM05D003804 ORTHO05D004350 9.4e-75 284.6 309 49.5
Carub.0006s1676 Capsella rubella HOM05D003804 ORTHO05D004350 2.1e-74 283.5 313 53.0
BcaB01g04900 Brassica carinata HOM05D003804 ORTHO05D004350 4.7e-74 282.3 313 50.8
Os04g0517400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 4.0e-73 279.3 296 52.4
vmacro10357 Vaccinium macrocarpon HOM05D003804 ORTHO05D004350 6.8e-73 278.5 310 48.1
BcaC03g13603 Brassica carinata HOM05D003804 ORTHO05D004350 3.4e-72 276.2 313 49.8
A03p08890 Brassica napus HOM05D003804 ORTHO05D004350 1.3e-71 274.2 314 50.6
Oeu016029.1 Olea europaea HOM05D003804 ORTHO05D004350 2.2e-71 273.5 260 54.6
BolC3t13517H Brassica oleracea HOM05D003804 ORTHO05D004350 3.7e-71 272.7 314 49.7
C03p10370 Brassica napus HOM05D003804 ORTHO05D004350 1.1e-70 271.2 314 49.7
BraA03t10215Z Brassica rapa HOM05D003804 ORTHO05D004350 1.1e-70 271.2 314 49.7
BraA02t05453Z Brassica rapa HOM05D003804 ORTHO05D004350 1.8e-70 270.4 313 49.5
BcaB05g23331 Brassica carinata HOM05D003804 ORTHO05D004350 3.1e-70 269.6 312 49.7
BolC2t06899H Brassica oleracea HOM05D003804 ORTHO05D004350 9.1e-70 268.1 317 49.2
C02p09920 Brassica napus HOM05D003804 ORTHO05D004350 2.7e-69 266.5 313 48.9
TAR365G0644 Trochodendron aralioides HOM05D003804 ORTHO05D004350 4.5e-69 265.8 272 54.0
A02p04940 Brassica napus HOM05D003804 ORTHO05D004350 1.1e-67 261.2 313 47.9
Hund22153 Selenicereus undatus HOM05D003804 ORTHO05D004350 3.0e-65 253.1 308 45.5
Mapoly0009s0041 Marchantia polymorpha HOM05D003804 ORTHO05D004350 1.0e-60 238.0 317 42.0
SMO364G0002 Selaginella moellendorffii HOM05D003804 ORTHO05D004350 1.2e-56 224.6 299 43.8
Pp3c1_6500 Physcomitrium patens HOM05D003804 ORTHO05D004350 1.8e-49 200.7 321 37.7
Atru.chr2.1108 Acer truncatum HOM05D003804 ORTHO05D004350 7.5e-48 195.3 134 67.2
Pp3c2_32110 Physcomitrium patens HOM05D003804 ORTHO05D004350 9.8e-48 194.9 306 37.9
Lsat_1_v5_gn_2_107981 Lactuca sativa HOM05D003804 ORTHO05D004350 1.7e-47 194.1 256 46.1
CBR_g3073 Chara braunii HOM05D003804 ORTHO05D004350 1.6e-45 187.6 335 36.1
Gorai.007G273500 Gossypium raimondii HOM05D003804 ORTHO05D004350 1.9e-43 180.6 311 38.6
Atru.chr2.1109 Acer truncatum HOM05D003804 ORTHO05D004350 7.5e-40 168.7 158 52.5
Eucgr.H04216 Eucalyptus grandis HOM05D003804 ORTHO05D004350 3.5e-37 159.8 148 56.8
MELO3C008614.2 Cucumis melo HOM05D003804 ORTHO05D004350 1.1e-33 148.3 131 54.2
unitig_32.g11828 Utricularia gibba HOM05D003804 ORTHO05D004350 9.2e-30 135.2 130 50.8
Gohir.D11G254801 Gossypium hirsutum HOM05D003804 ORTHO05D004350 1.2e-26 124.8 168 44.6
Glyma.10G164501 Glycine max HOM05D003804 ORTHO05D004350 8.1e-26 122.1 132 50.0
HanXRQChr01g0012051 Helianthus annuus HOM05D003804 ORTHO05D004350 2.0e-24 117.5 189 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2512 Anthoceros agrestis HOM05D003804 ORTHO05D004350 7.3e-19 99.0 53 71.7
HPP92_001761 Vanilla planifolia HOM05D003804 ORTHO05D004350 2.4e-17 94.0 173 37.6
TAR365G0429 Trochodendron aralioides HOM05D003804 ORTHO05D004350 9.9e-16 88.6 36 97.2
PRCOL_00006236 Prasinoderma coloniale HOM05D003804 ORTHO05D004350 1.2e-08 65.1 336 25.6
Cre10.g422450 Chlamydomonas reinhardtii HOM05D003804 ORTHO05D004350 1.7e-07 61.2 223 26.0


User provided reference genes

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