Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 2.2e-247 858.6 470 100.0
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 8.3e-117 424.9 477 53.9
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.2e-115 421.0 443 55.5
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.0e-115 420.2 487 52.6
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.3e-114 416.8 464 53.0
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 9.5e-113 411.4 485 52.0
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 2.8e-112 409.8 486 52.5
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.7e-112 409.1 464 52.2
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 4.4e-110 402.5 420 55.7
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.2e-109 400.2 496 49.2
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 2.2e-109 400.2 341 62.2
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 3.7e-109 399.4 438 51.4
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 4.9e-109 399.1 417 55.4
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.4e-108 397.5 345 61.7
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.4e-108 397.5 445 52.1
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.8e-108 397.1 436 54.1
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 3.5e-107 392.9 459 49.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 4.5e-107 392.5 464 51.7
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.0e-106 391.3 459 49.0
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.3e-106 391.0 439 52.8
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.3e-106 391.0 426 53.3
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.3e-106 390.2 408 52.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 2.9e-106 389.8 392 57.4
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 8.6e-106 388.3 440 51.1
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.5e-105 386.7 505 46.9
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 5.6e-105 385.6 435 52.0
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.6e-104 384.0 449 52.6
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 2.8e-104 383.3 442 51.8
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 4.7e-104 382.5 317 65.9
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 4.7e-104 382.5 472 50.4
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 8.0e-104 381.7 352 59.4
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.4e-103 380.9 496 47.8
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 3.1e-103 379.8 457 48.8
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.1e-103 379.8 352 59.4
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 5.2e-103 379.0 307 64.8
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 8.9e-103 378.3 483 48.0
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 1.5e-102 377.5 453 49.0
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.5e-102 377.5 433 50.6
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 2.6e-102 376.7 403 52.9
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.4e-102 375.9 348 57.8
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 5.8e-102 375.6 470 51.3
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 2.2e-101 373.6 427 51.8
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.7e-101 372.9 414 52.2
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 4.9e-101 372.5 304 63.8
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 6.4e-101 372.1 420 52.9
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 6.4e-101 372.1 517 47.2
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.1e-100 371.3 467 49.9
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 3.2e-100 369.8 409 52.6
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.2e-100 369.8 479 49.5
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 4.1e-100 369.4 434 51.6
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 9.2e-100 368.2 467 49.7
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 2.0e-99 367.1 457 50.8
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 2.7e-99 366.7 370 59.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.3e-98 364.4 298 64.1
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.7e-98 364.0 410 53.9
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 3.9e-98 362.8 419 52.5
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 5.0e-98 362.5 436 50.0
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 6.6e-98 362.1 477 46.8
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 8.6e-98 361.7 359 57.4
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 3.3e-97 359.8 433 50.1
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 7.3e-97 358.6 476 47.7
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.8e-95 354.0 298 61.4
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.3e-95 353.6 402 51.2
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.2e-94 351.3 402 50.7
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.0e-94 350.5 452 45.1
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.0e-94 350.5 451 47.5
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.6e-94 350.1 343 56.9
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.3e-93 347.8 418 51.2
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 2.2e-93 347.1 326 57.4
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.9e-93 346.7 445 48.8
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 4.9e-93 345.9 336 54.8
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.4e-92 344.4 323 56.3
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 3.2e-92 343.2 441 46.0
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 4.1e-92 342.8 324 57.1
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.4e-92 342.4 388 51.8
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 5.1e-90 335.9 420 48.6
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 8.6e-90 335.1 475 43.8
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.6e-88 330.9 437 47.1
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 2.8e-88 330.1 434 46.5
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 3.6e-88 329.7 439 45.8
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 8.1e-88 328.6 331 52.0
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.3e-87 327.0 329 53.5
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 3.1e-87 326.6 458 43.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 5.8e-86 322.4 345 52.5
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 8.3e-85 318.5 460 45.2
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 8.3e-85 318.5 492 44.5
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 9.2e-84 315.1 438 42.7
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 2.7e-83 313.5 484 44.8
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.3e-82 311.2 270 57.8
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.3e-82 310.5 450 45.1
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.9e-82 309.7 359 52.1
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.1e-80 303.9 322 51.2
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.1e-76 291.6 256 58.2
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.9e-73 280.8 367 48.5
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 6.9e-71 272.3 277 54.5
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 7.1e-68 262.3 293 52.2
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 9.6e-65 251.9 310 46.5
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 4.8e-64 249.6 423 37.6
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 9.0e-63 245.4 315 47.0
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.4e-60 237.3 292 45.9
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 9.6e-57 225.3 317 41.3
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 3.7e-56 223.4 299 43.1
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.5e-52 210.7 282 41.8
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 3.3e-49 200.3 202 51.0
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.3e-48 198.4 171 60.8
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.5e-43 180.3 276 43.1
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 5.7e-41 172.9 240 43.8
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 2.8e-40 170.6 169 54.4
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 2.4e-39 167.5 277 41.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.1e-39 166.8 102 77.5
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 2.9e-37 160.6 154 54.5
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.7e-32 144.8 143 58.0
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 2.8e-32 144.1 235 36.2
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.0e-29 135.6 129 55.0
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.7e-29 134.8 265 34.7
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 6.5e-29 132.9 147 49.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.2e-27 128.6 123 56.9
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.2e-27 128.6 123 56.9
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.6e-27 127.1 210 40.5
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 6.3e-24 116.3 121 55.4
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.2e-21 107.8 88 61.4
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.1e-19 101.3 62 75.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.0e-13 82.4 52 71.2
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 5.0e-13 80.1 67 53.7
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 3.6e-11 73.9 113 36.3
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.5e-09 68.6 50 62.0
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 6.3e-08 63.2 45 62.2
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 8.3e-08 62.8 105 36.2
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.1e-07 60.5 68 52.9
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 9.1e-07 59.3 145 31.7


User provided reference genes

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