Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 8.2e-51 203.4 98 100.0
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 4.5e-49 197.6 98 96.9
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.1e-34 148.3 82 82.9
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.5e-33 146.0 89 77.5
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.7e-32 142.5 87 77.0
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.8e-32 141.4 96 69.8
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 8.5e-32 140.2 87 79.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 8.5e-32 140.2 87 79.3
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.2e-31 138.3 92 69.6
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.2e-30 136.3 81 76.5
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.1e-30 135.6 87 73.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.7e-30 135.2 85 72.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.7e-30 134.4 89 74.2
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 6.1e-30 134.0 85 74.1
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 7.9e-30 133.7 88 73.9
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.8e-29 132.5 83 75.9
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.9e-29 131.3 83 74.7
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 3.9e-29 131.3 88 72.7
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 5.1e-29 131.0 88 71.6
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 6.7e-29 130.6 87 71.3
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 8.8e-29 130.2 77 79.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 8.8e-29 130.2 83 73.5
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.1e-28 129.8 77 79.2
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.5e-28 129.4 77 79.2
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.5e-28 129.4 83 77.1
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.5e-28 129.4 74 78.4
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.5e-28 129.4 83 73.5
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.0e-28 129.0 73 82.2
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-28 129.0 83 73.5
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.0e-28 129.0 80 80.0
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 3.3e-28 128.3 94 69.1
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 3.3e-28 128.3 85 72.9
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 3.3e-28 128.3 85 72.9
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.4e-28 127.9 72 79.2
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 5.7e-28 127.5 73 80.8
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 5.7e-28 127.5 95 65.3
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 5.7e-28 127.5 83 71.1
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 9.7e-28 126.7 85 69.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-27 126.3 90 67.8
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-27 126.3 90 67.8
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-27 126.3 99 65.7
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 1.3e-27 126.3 74 77.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.7e-27 125.9 100 64.0
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.7e-27 125.9 86 72.1
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.7e-27 125.9 90 66.7
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.2e-27 125.6 99 65.7
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.2e-27 125.6 85 71.8
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.8e-27 125.2 89 65.2
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 3.7e-27 124.8 85 69.4
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.8e-27 124.4 87 67.8
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 4.8e-27 124.4 90 67.8
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 4.8e-27 124.4 78 74.4
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.8e-27 124.4 86 67.4
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.3e-27 124.0 73 78.1
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 6.3e-27 124.0 77 75.3
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 8.2e-27 123.6 95 61.1
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.1e-26 123.2 73 76.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-26 123.2 90 64.4
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.1e-26 123.2 83 71.1
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.1e-26 123.2 99 62.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.4e-26 122.9 73 76.7
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.4e-26 122.9 97 61.9
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.4e-26 122.9 99 62.6
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.4e-26 122.9 81 70.4
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.8e-26 122.5 90 66.7
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.8e-26 122.5 71 76.1
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.8e-26 122.5 86 68.6
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.1e-26 121.7 84 70.2
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.1e-26 121.7 77 72.7
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 4.1e-26 121.3 83 69.9
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.3e-26 120.9 92 67.4
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 7.0e-26 120.6 98 65.3
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 9.1e-26 120.2 77 71.4
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 9.1e-26 120.2 90 65.6
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-25 119.8 73 72.6
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.0e-25 119.0 74 74.3
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.0e-25 119.0 73 72.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.0e-25 119.0 73 75.3
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 2.6e-25 118.6 78 70.5
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.5e-25 118.2 69 75.4
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.5e-25 118.2 69 75.4
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 4.5e-25 117.9 91 62.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 7.7e-25 117.1 98 60.2
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.3e-24 116.3 78 67.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-24 115.9 82 67.1
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.7e-24 115.9 101 60.4
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.7e-24 115.9 78 69.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.7e-24 115.9 78 69.2
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.2e-24 115.5 78 71.8
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.9e-24 115.2 73 72.6
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.9e-24 115.2 82 67.1
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.9e-24 115.2 76 68.4
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.8e-24 114.8 105 56.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.0e-24 114.4 73 71.2
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 5.0e-24 114.4 74 71.6
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 5.0e-24 114.4 96 58.3
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 6.5e-24 114.0 65 78.5
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 72 70.8
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 72 70.8
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.9e-23 112.5 91 58.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 4.2e-23 111.3 72 70.8
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 7.2e-23 110.5 83 62.7
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 9.4e-23 110.2 76 67.1
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 9.4e-23 110.2 76 68.4
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.6e-22 109.4 72 69.4
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.1e-22 109.0 70 68.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.1e-22 109.0 79 64.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 2.7e-22 108.6 74 68.9
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.7e-22 108.6 73 69.9
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.6e-22 108.2 72 69.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.6e-22 108.2 74 67.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 4.7e-22 107.8 86 61.6
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 4.7e-22 107.8 77 70.1
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.1e-22 107.5 61 78.7
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 8.0e-22 107.1 72 70.8
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 8.0e-22 107.1 86 61.6
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.0e-22 107.1 70 70.0
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.0e-21 106.7 71 66.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.8e-21 105.9 67 74.6
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.3e-21 105.5 78 67.9
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.3e-21 105.5 70 68.6
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.0e-21 104.8 69 69.6
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 6.7e-21 104.0 61 75.4
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 8.8e-21 103.6 89 57.3
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 8.8e-21 103.6 81 59.3
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-20 103.2 61 73.8
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-20 103.2 61 73.8
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.5e-20 102.8 86 57.0
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-20 102.8 61 73.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.5e-20 102.8 61 73.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.5e-20 102.8 61 75.4
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.6e-20 102.1 70 70.0
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.6e-20 102.1 68 67.6
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 3.7e-19 98.2 96 50.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.1e-18 96.7 74 59.5
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.1e-18 96.7 93 50.5
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.4e-18 96.3 89 53.9
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 7.0e-18 94.0 76 60.5
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 7.0e-18 94.0 76 60.5
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.0e-17 92.4 72 62.5
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.5e-17 91.3 67 64.2
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.7e-16 89.4 95 50.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.9e-16 88.6 62 64.5
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 8.5e-16 87.0 57 66.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-15 86.3 56 67.9
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.2e-15 85.1 56 66.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.4e-15 83.6 74 52.7
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-14 83.2 56 64.3
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.2e-14 83.2 54 64.8
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-12 76.6 59 57.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-12 76.3 115 40.9
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.7e-11 72.8 44 72.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.7e-11 72.8 63 47.6
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.2e-09 66.6 60 53.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 9.4e-07 57.0 40 65.0
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.2e-06 56.6 47 53.2


User provided reference genes

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