Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 7.1e-187 657.1 336 100.0
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 3.2e-147 525.4 328 80.8
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 4.2e-147 525.0 330 80.9
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 9.4e-147 523.9 334 78.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.2e-146 523.5 328 80.5
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.2e-146 523.5 328 80.5
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.7e-146 522.3 329 80.5
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 2.7e-146 522.3 334 78.1
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.7e-146 522.3 327 80.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 3.6e-146 521.9 333 79.3
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.6e-146 521.5 327 81.0
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 7.9e-146 520.8 328 80.2
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 7.9e-146 520.8 327 80.7
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.0e-145 520.4 328 81.4
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.8e-145 519.6 327 80.1
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.9e-145 518.5 327 80.1
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 6.7e-145 517.7 328 80.8
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 6.7e-145 517.7 339 78.8
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.1e-144 516.9 329 79.3
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.1e-144 516.9 328 80.5
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.5e-144 516.5 328 79.9
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.5e-144 516.5 334 78.1
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.0e-144 516.2 327 81.0
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.5e-144 515.8 328 80.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.5e-144 515.8 327 80.1
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.5e-144 515.8 331 78.5
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.5e-144 515.8 327 80.1
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 3.3e-144 515.4 328 79.9
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 3.3e-144 515.4 327 79.5
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 3.3e-144 515.4 327 79.5
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 4.3e-144 515.0 327 78.9
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 4.3e-144 515.0 324 79.9
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 4.3e-144 515.0 324 80.2
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 5.7e-144 514.6 327 79.2
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 7.4e-144 514.2 327 79.8
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 7.4e-144 514.2 327 79.8
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 7.4e-144 514.2 327 78.9
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 7.4e-144 514.2 334 78.4
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 7.4e-144 514.2 328 79.9
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 7.4e-144 514.2 327 80.4
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 9.7e-144 513.8 327 80.4
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 9.7e-144 513.8 328 78.4
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.7e-144 513.8 327 79.8
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.3e-143 513.5 326 80.4
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.3e-143 513.5 327 78.6
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.2e-143 512.7 327 79.5
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.8e-143 512.3 328 78.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 3.7e-143 511.9 329 79.0
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 4.8e-143 511.5 327 79.8
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 6.3e-143 511.1 327 80.1
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.1e-142 510.4 327 79.2
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.4e-142 510.0 324 80.6
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.4e-142 510.0 324 80.6
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.4e-142 510.0 328 79.3
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.4e-142 509.2 327 78.9
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.4e-142 509.2 328 79.3
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 3.1e-142 508.8 324 79.9
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 6.9e-142 507.7 327 78.6
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 6.9e-142 507.7 329 78.1
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 9.1e-142 507.3 326 79.1
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.2e-141 506.9 327 79.5
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.2e-141 506.9 327 79.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.5e-141 506.5 330 78.8
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.5e-141 506.5 333 79.0
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.6e-141 505.8 327 79.2
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.7e-141 504.2 328 78.7
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.2e-140 502.7 328 76.5
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 6.5e-140 501.1 328 79.0
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 6.5e-140 501.1 332 77.1
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 8.5e-140 500.7 327 78.0
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-139 500.4 328 77.1
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.1e-139 500.4 327 77.7
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.2e-139 498.4 328 75.3
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.6e-138 496.5 328 77.1
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 2.1e-138 496.1 328 77.1
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 2.1e-138 496.1 328 77.1
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.7e-138 495.7 327 77.7
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 3.6e-138 495.4 328 76.8
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 3.6e-138 495.4 328 76.8
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 3.6e-138 495.4 328 76.8
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 3.6e-138 495.4 328 76.8
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 3.6e-138 495.4 326 76.1
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 4.7e-138 495.0 328 76.8
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 6.1e-138 494.6 355 71.0
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.0e-137 493.8 328 76.5
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 1.8e-137 493.0 328 76.5
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 3.9e-137 491.9 328 76.2
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 3.9e-137 491.9 324 78.1
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.5e-136 490.0 382 69.1
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.7e-136 488.0 327 76.8
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 7.4e-136 487.6 362 71.8
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.7e-135 486.5 327 76.5
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.2e-135 486.1 304 80.6
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 4.1e-134 481.9 328 75.6
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 7.0e-134 481.1 327 76.5
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.3e-132 476.9 325 73.5
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 5.0e-132 474.9 319 75.2
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.1e-131 473.8 325 74.2
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.9e-131 473.0 329 72.6
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.5e-131 472.6 324 74.4
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 2.5e-131 472.6 327 74.0
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 8.0e-130 467.6 451 58.3
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.3e-129 466.1 329 74.2
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.4e-126 456.8 328 72.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 6.5e-124 448.0 278 80.9
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 1.2e-122 443.7 328 72.3
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.6e-122 443.4 298 76.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.0e-121 438.7 373 65.4
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 8.8e-121 437.6 327 71.3
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.1e-118 429.1 330 69.4
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.2e-115 419.1 326 67.5
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 2.2e-111 406.4 332 66.6
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.4e-110 403.7 316 63.6
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 3.1e-110 402.5 324 59.6
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 5.5e-107 391.7 324 62.3
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.2e-104 384.0 323 63.5
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 1.3e-103 380.6 234 81.2
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.0e-100 368.6 233 77.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 4.7e-90 335.5 273 66.3
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.1e-89 334.3 321 59.2
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 2.0e-88 330.1 234 70.1
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.5e-83 313.9 226 73.0
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-82 310.5 197 79.7
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.6e-77 293.9 328 53.7
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-75 287.7 220 69.5
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 3.3e-75 286.2 334 53.3
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 4.3e-75 285.8 333 45.0
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-74 283.5 220 68.6
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.1e-73 281.2 167 81.4
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.7e-71 273.9 220 67.3
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.1e-61 240.4 168 73.8
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.9e-60 236.1 267 51.3
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 5.6e-59 232.3 161 76.4
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 4.2e-54 216.1 328 44.5
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 8.7e-52 208.4 132 79.5
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.3e-47 194.5 130 76.9
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.8e-36 157.5 193 46.1
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.4e-35 152.1 99 76.8
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-34 149.8 112 70.5
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-33 148.3 89 82.0
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 5.3e-33 146.0 186 47.3
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 4.5e-32 142.9 161 54.7
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.5e-30 137.1 69 91.3
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.5e-27 127.9 72 84.7
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 7.4e-27 125.6 88 75.0
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.3e-26 122.5 65 87.7
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.4e-25 121.3 88 64.8
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 6.9e-25 119.0 86 74.4
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-24 118.2 80 71.2
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 5.0e-23 112.8 74 70.3
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 6.5e-23 112.5 69 81.2
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-21 108.2 71 77.5
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.6e-21 107.8 77 72.7
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-11 75.1 63 65.1
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 3.7e-10 70.1 62 62.9
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.6e-08 63.9 41 75.6
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.9e-08 62.8 33 87.9
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 3.2e-06 57.0 85 42.4


User provided reference genes

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