Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 0.0e+00 1247.6 678 100.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 0.0e+00 1093.6 707 86.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.3e-158 564.3 807 46.6
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 8.7e-152 541.6 808 46.2
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 3.4e-148 529.6 783 44.7
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.7e-147 527.3 780 46.5
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 5.0e-147 525.8 704 48.0
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 6.1e-145 518.8 806 45.4
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.4e-144 517.7 760 44.9
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 9.7e-143 511.5 762 45.9
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 6.3e-142 508.8 770 45.2
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.1e-141 506.1 756 45.9
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.0e-139 501.5 757 45.4
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 2.9e-139 500.0 773 45.0
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.0e-136 491.5 791 44.8
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 1.5e-135 487.6 797 43.2
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 2.0e-135 487.3 796 43.5
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 2.6e-135 486.9 805 44.1
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 3.3e-135 486.5 793 45.8
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.7e-134 484.2 773 43.5
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 2.2e-134 483.8 716 45.7
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.8e-134 483.4 772 43.5
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 7.0e-133 478.8 769 45.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 7.0e-133 478.8 718 44.7
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.6e-132 476.9 768 43.9
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 7.7e-132 475.3 769 44.2
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 5.0e-131 472.6 774 43.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.1e-130 471.5 780 43.5
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 7.2e-130 468.8 800 43.0
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 7.2e-130 468.8 767 42.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 7.2e-130 468.8 767 43.5
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.6e-129 467.6 689 46.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.6e-129 467.6 758 43.0
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.8e-128 464.2 785 42.4
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 5.2e-128 462.6 781 43.1
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 8.8e-128 461.8 760 43.3
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 2.0e-127 460.7 742 44.7
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.7e-126 457.6 781 43.1
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 3.7e-126 456.4 771 42.8
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.1e-125 454.9 813 41.7
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.1e-125 454.9 779 42.1
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 5.3e-125 452.6 783 42.0
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.5e-124 449.9 800 42.1
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.5e-124 449.9 771 42.5
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.0e-123 448.4 771 42.0
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 5.0e-123 446.0 760 43.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 8.5e-123 445.3 778 42.7
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 8.5e-123 445.3 716 42.9
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 2.5e-122 443.7 783 41.3
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.2e-122 443.4 754 42.7
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 4.7e-121 439.5 782 42.1
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 6.1e-121 439.1 737 43.3
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.4e-120 438.0 763 42.6
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.8e-120 437.6 714 44.8
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 2.3e-120 437.2 707 44.6
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.0e-120 436.4 748 42.8
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.8e-120 435.6 758 43.3
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 6.8e-120 435.6 775 41.7
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 8.8e-120 435.3 798 40.6
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.2e-119 434.9 721 42.3
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.5e-119 434.5 753 42.4
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 6.3e-118 429.1 776 41.6
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.2e-116 424.9 701 42.7
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.7e-116 423.7 668 45.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 7.7e-116 422.2 833 39.6
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.8e-115 419.9 703 43.5
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.1e-114 418.3 715 42.1
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 1.5e-114 417.9 790 41.1
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.5e-114 417.9 743 42.5
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.9e-114 417.5 702 42.9
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.9e-114 417.5 740 42.4
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.9e-114 417.5 740 40.4
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.2e-114 416.8 760 42.0
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 4.2e-114 416.4 620 45.8
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-113 414.8 776 41.1
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.1e-113 414.1 777 39.5
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.1e-113 414.1 516 52.1
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 4.7e-113 412.9 759 41.0
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.0e-112 410.2 759 41.6
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 6.8e-112 409.1 782 40.8
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 8.8e-112 408.7 736 41.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-111 407.9 749 41.1
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 2.0e-111 407.5 772 40.8
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.6e-111 407.1 758 40.6
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.6e-111 407.1 758 40.6
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 9.8e-111 405.2 764 40.4
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.3e-110 404.8 776 40.1
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 3.1e-109 400.2 782 39.0
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.6e-106 389.4 782 38.6
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.2e-105 388.3 693 41.4
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 8.0e-105 385.6 702 40.6
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.3e-104 384.0 759 39.3
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 2.2e-102 377.5 857 37.0
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 2.9e-102 377.1 688 41.0
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.4e-101 374.8 748 39.6
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.9e-100 369.4 758 37.7
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.3e-99 368.2 497 49.1
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.3e-99 368.2 324 62.7
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.7e-99 367.9 743 40.0
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 5.0e-99 366.3 746 39.7
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 5.0e-99 366.3 743 39.6
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 8.6e-99 365.5 746 39.7
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 8.6e-99 365.5 746 39.7
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 8.6e-99 365.5 681 40.4
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-98 364.4 739 40.3
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.3e-98 362.5 755 38.1
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.1e-97 360.9 370 56.8
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.7e-94 351.3 754 38.1
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.9e-94 350.5 762 37.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.9e-94 350.5 759 36.9
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 6.4e-94 349.4 770 36.2
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 9.2e-93 345.5 733 37.4
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.0e-92 344.4 689 40.2
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 2.0e-92 344.4 618 40.8
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 6.0e-92 342.8 764 37.2
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 6.0e-92 342.8 721 36.5
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.0e-91 342.0 758 37.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 3.9e-91 340.1 633 41.5
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.3e-90 336.7 603 40.6
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.3e-90 335.9 729 36.5
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 3.6e-89 333.6 763 37.2
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.4e-88 331.6 755 36.3
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 2.3e-88 330.9 616 40.9
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 6.8e-88 329.3 754 35.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-87 327.0 620 39.2
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 4.4e-87 326.6 616 40.6
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.2e-86 324.3 374 54.5
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 4.1e-85 320.1 703 36.3
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.7e-84 317.4 747 36.3
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 4.6e-84 316.6 756 35.7
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 6.6e-83 312.8 718 36.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-81 308.5 664 37.5
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.6e-81 307.0 464 46.3
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-80 303.9 752 35.0
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.4e-77 295.0 752 35.4
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 3.6e-73 280.4 735 33.5
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 9.3e-69 265.8 635 35.6
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 9.0e-64 249.2 692 32.5
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.3e-59 234.6 660 31.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 4.6e-52 210.3 330 45.2
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-51 208.4 250 52.4
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.1e-48 199.1 350 42.9
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 2.2e-46 191.4 610 31.0
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 4.9e-46 190.3 348 37.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.3e-43 181.4 384 39.8
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.5e-39 168.7 191 56.0
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 6.9e-32 143.3 141 58.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-30 139.4 334 37.1
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-29 136.0 171 52.0
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.7e-28 131.3 183 49.2
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-24 118.2 135 52.6
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 2.4e-24 118.2 382 31.4
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.1e-16 92.8 147 40.8
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 7.7e-15 86.7 104 48.1
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.7e-14 85.5 119 41.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 5.0e-14 84.0 274 29.6
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 9.4e-13 79.7 202 30.2
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.8e-11 75.5 62 64.5
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.0e-11 74.3 195 33.8
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.8e-09 67.4 83 48.2
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.8e-08 65.5 142 32.4


User provided reference genes

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