Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0952 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 1.2e-58 229.6 113 100.0
CDE06G1279 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 2.7e-50 201.8 107 93.5
Thecc.02G101300 Theobroma cacao HOM05D003465 ORTHO05D004034 6.1e-42 174.1 107 78.5
Hund00338 Selenicereus undatus HOM05D003465 ORTHO05D004034 1.0e-41 173.3 111 74.8
Hund06174 Selenicereus undatus HOM05D003465 ORTHO05D004034 2.3e-41 172.2 112 73.2
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 4.0e-41 171.4 107 79.4
Gohir.D13G039400 Gossypium hirsutum HOM05D003465 ORTHO05D004034 5.2e-41 171.0 107 77.6
Gorai.013G044300 Gossypium raimondii HOM05D003465 ORTHO05D004034 5.2e-41 171.0 107 77.6
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 6.8e-41 170.6 107 73.8
Duzib052G0281 Durio zibethinus HOM05D003465 ORTHO05D004034 8.8e-41 170.2 107 76.6
Gohir.A13G040700 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.2e-40 169.9 107 78.5
Sabra09G0077300 Salix brachista HOM05D003465 ORTHO05D004034 2.0e-40 169.1 107 75.7
SGA_v2.0_scaffold90G27641 Striga asiatica HOM05D003465 ORTHO05D004034 2.0e-40 169.1 107 72.9
EL10Ac9g21840 Beta vulgaris HOM05D003465 ORTHO05D004034 2.6e-40 168.7 107 74.8
TAR625G0342 Trochodendron aralioides HOM05D003465 ORTHO05D004034 3.4e-40 168.3 108 75.0
CANSAT25G3338 Cannabis sativa HOM05D003465 ORTHO05D004034 4.4e-40 167.9 111 72.1
Lalb_Chr09g0328341 Lupinus albus HOM05D003465 ORTHO05D004034 5.7e-40 167.5 106 76.4
AUR62016610 Chenopodium quinoa HOM05D003465 ORTHO05D004034 7.5e-40 167.2 107 73.8
Nn5g30308 Nelumbo nucifera HOM05D003465 ORTHO05D004034 7.5e-40 167.2 108 74.1
arahy.Tifrunner.gnm1.ann1.5RT47R Arachis hypogaea HOM05D003465 ORTHO05D004034 9.8e-40 166.8 107 73.8
arahy.Tifrunner.gnm1.ann1.PPSU1J Arachis hypogaea HOM05D003465 ORTHO05D004034 9.8e-40 166.8 107 73.8
CANSAT25G3355 Cannabis sativa HOM05D003465 ORTHO05D004034 9.8e-40 166.8 111 72.1
CiPaw.05G007600 Carya illinoinensis HOM05D003465 ORTHO05D004034 9.8e-40 166.8 111 73.0
Potri.009G101500 Populus trichocarpa HOM05D003465 ORTHO05D004034 9.8e-40 166.8 107 74.8
THA.LOC104803455 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 9.8e-40 166.8 107 72.9
AT3G19280 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 1.3e-39 166.4 108 73.1
Cfa004534 Carpinus fangiana HOM05D003465 ORTHO05D004034 1.3e-39 166.4 111 71.2
Haze_10093 Corylus avellana HOM05D003465 ORTHO05D004034 1.3e-39 166.4 111 71.2
Gohir.D12G024600 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.3e-39 166.4 107 75.7
TWI79G0501 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 1.3e-39 166.4 107 74.8
Ah.01g006670 Amaranthus hybridus HOM05D003465 ORTHO05D004034 1.7e-39 166.0 112 69.6
Psat7g125480 Pisum sativum HOM05D003465 ORTHO05D004034 1.7e-39 166.0 108 73.1
Atru.chr5.2693 Acer truncatum HOM05D003465 ORTHO05D004034 2.2e-39 165.6 107 73.8
FAN15G0414 Fragaria x ananassa HOM05D003465 ORTHO05D004034 2.2e-39 165.6 107 73.8
FAN20G2338 Fragaria x ananassa HOM05D003465 ORTHO05D004034 2.2e-39 165.6 107 73.8
FAN27G0960 Fragaria x ananassa HOM05D003465 ORTHO05D004034 2.2e-39 165.6 107 73.8
FvH4_2g05930 Fragaria vesca HOM05D003465 ORTHO05D004034 2.8e-39 165.2 107 73.8
Gohir.A12G024000 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.8e-39 165.2 107 73.8
Lalb_Chr05g0219201 Lupinus albus HOM05D003465 ORTHO05D004034 2.8e-39 165.2 106 75.5
Nitab4.5_0007480g0040 Nicotiana tabacum HOM05D003465 ORTHO05D004034 2.8e-39 165.2 110 70.0
TPR.G31059 Trifolium pratense HOM05D003465 ORTHO05D004034 2.8e-39 165.2 107 74.8
TAR381G0440 Trochodendron aralioides HOM05D003465 ORTHO05D004034 2.8e-39 165.2 108 75.0
Ca_18690_v3 Cicer arietinum L. HOM05D003465 ORTHO05D004034 3.7e-39 164.9 107 73.8
Duzib132G0231 Durio zibethinus HOM05D003465 ORTHO05D004034 3.7e-39 164.9 107 73.8
Gorai.008G024900 Gossypium raimondii HOM05D003465 ORTHO05D004034 3.7e-39 164.9 107 74.8
RcHm_v2.0_Chr6g0257471 Rosa chinensis HOM05D003465 ORTHO05D004034 3.7e-39 164.9 107 72.9
AUR62011449 Chenopodium quinoa HOM05D003465 ORTHO05D004034 4.8e-39 164.5 107 72.0
Lalb_Chr16g0384751 Lupinus albus HOM05D003465 ORTHO05D004034 6.3e-39 164.1 106 74.5
Manes.07G078000 Manihot esculenta HOM05D003465 ORTHO05D004034 6.3e-39 164.1 111 71.2
QL11p035314 Quercus lobata HOM05D003465 ORTHO05D004034 6.3e-39 164.1 111 71.2
vmacro19503 Vaccinium macrocarpon HOM05D003465 ORTHO05D004034 6.3e-39 164.1 108 73.1
Carub.0003s1911 Capsella rubella HOM05D003465 ORTHO05D004034 8.3e-39 163.7 108 71.3
Thhalv10011402m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 8.3e-39 163.7 109 73.4
Lsat_1_v5_gn_7_86701 Lactuca sativa HOM05D003465 ORTHO05D004034 8.3e-39 163.7 108 71.3
MD10G1094900 Malus domestica HOM05D003465 ORTHO05D004034 1.1e-38 163.3 110 71.8
Nn1g04851 Nelumbo nucifera HOM05D003465 ORTHO05D004034 1.1e-38 163.3 107 71.0
Sopen10g021410 Solanum pennellii HOM05D003465 ORTHO05D004034 1.1e-38 163.3 108 72.2
CARHR039740 Cardamine hirsuta HOM05D003465 ORTHO05D004034 1.4e-38 162.9 109 72.5
DCAR_022021 Daucus carota HOM05D003465 ORTHO05D004034 1.4e-38 162.9 106 75.5
Rhsim05G0084700 Rhododendron simsii HOM05D003465 ORTHO05D004034 1.4e-38 162.9 108 72.2
Nitab4.5_0002543g0080 Nicotiana tabacum HOM05D003465 ORTHO05D004034 1.8e-38 162.5 108 72.2
Actinidia00437 Actinidia chinensis HOM05D003465 ORTHO05D004034 2.4e-38 162.2 108 73.1
BcaB07g33651 Brassica carinata HOM05D003465 ORTHO05D004034 2.4e-38 162.2 109 72.5
Cpa.g.sc62.7 Carica papaya HOM05D003465 ORTHO05D004034 2.4e-38 162.2 108 72.2
DCAR_029059 Daucus carota HOM05D003465 ORTHO05D004034 2.4e-38 162.2 107 72.0
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 2.4e-38 162.2 111 68.5
Migut.B00352 Erythranthe guttata HOM05D003465 ORTHO05D004034 2.4e-38 162.2 108 71.3
Medtr4g086010 Medicago truncatula HOM05D003465 ORTHO05D004034 2.4e-38 162.2 107 72.9
GSVIVG01031736001 Vitis vinifera HOM05D003465 ORTHO05D004034 2.4e-38 162.2 107 72.9
ClCG05G010040 Citrullus lanatus HOM05D003465 ORTHO05D004034 3.1e-38 161.8 111 69.4
PSO675G3714 Papaver somniferum HOM05D003465 ORTHO05D004034 4.1e-38 161.4 108 70.4
Sp1g36600 Schrenkiella parvula HOM05D003465 ORTHO05D004034 4.1e-38 161.4 108 73.1
Sp3g17360 Schrenkiella parvula HOM05D003465 ORTHO05D004034 4.1e-38 161.4 107 72.0
PGSC0003DMG402006223 Solanum tuberosum HOM05D003465 ORTHO05D004034 4.1e-38 161.4 108 71.3
Carub.0001s3892 Capsella rubella HOM05D003465 ORTHO05D004034 5.4e-38 161.0 108 72.2
Dinv42161 Davidia involucrata HOM05D003465 ORTHO05D004034 5.4e-38 161.0 107 73.8
Lj4g0026387 Lotus japonicus HOM05D003465 ORTHO05D004034 5.4e-38 161.0 105 73.3
Peaxi162Scf00003g02335 Petunia axillaris HOM05D003465 ORTHO05D004034 5.4e-38 161.0 108 70.4
Prupe.8G126200 Prunus persica HOM05D003465 ORTHO05D004034 5.4e-38 161.0 107 73.8
TWI31G0519 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 5.4e-38 161.0 107 72.0
Actinidia27958 Actinidia chinensis HOM05D003465 ORTHO05D004034 7.0e-38 160.6 108 73.1
BraA06t23577Z Brassica rapa HOM05D003465 ORTHO05D004034 7.0e-38 160.6 109 70.6
MBI03_g13465_MAGBIO Magnolia biondii HOM05D003465 ORTHO05D004034 7.0e-38 160.6 107 71.0
Sed0016548 Sechium edule HOM05D003465 ORTHO05D004034 7.0e-38 160.6 108 72.2
BcaC08g43160 Brassica carinata HOM05D003465 ORTHO05D004034 9.1e-38 160.2 109 72.5
C06p04480 Brassica napus HOM05D003465 ORTHO05D004034 9.1e-38 160.2 109 72.5
BolC6t35578H Brassica oleracea HOM05D003465 ORTHO05D004034 9.1e-38 160.2 109 72.5
CSS0040219 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 9.1e-38 160.2 108 72.2
Hma1.2p1_0474F.1_g160420 Hydrangea macrophylla HOM05D003465 ORTHO05D004034 9.1e-38 160.2 108 74.1
Oeu010591.2 Olea europaea HOM05D003465 ORTHO05D004034 9.1e-38 160.2 107 72.0
PSO541G4994 Papaver somniferum HOM05D003465 ORTHO05D004034 9.1e-38 160.2 108 69.4
AL1G57150 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 1.2e-37 159.8 108 72.2
BcaC07g37019 Brassica carinata HOM05D003465 ORTHO05D004034 1.2e-37 159.8 109 72.5
A08p03730 Brassica napus HOM05D003465 ORTHO05D004034 1.2e-37 159.8 109 72.5
BraA08t32401Z Brassica rapa HOM05D003465 ORTHO05D004034 1.2e-37 159.8 109 72.5
Glyma.02G131900 Glycine max HOM05D003465 ORTHO05D004034 1.2e-37 159.8 108 70.4
MD05G1081600 Malus domestica HOM05D003465 ORTHO05D004034 1.2e-37 159.8 107 72.0
Solyc10g050230.3 Solanum lycopersicum HOM05D003465 ORTHO05D004034 1.2e-37 159.8 108 70.4
A06p03720 Brassica napus HOM05D003465 ORTHO05D004034 1.6e-37 159.5 109 72.5
Ciclev10028212m.g Citrus clementina HOM05D003465 ORTHO05D004034 1.6e-37 159.5 108 70.4
Dinv15715 Davidia involucrata HOM05D003465 ORTHO05D004034 1.6e-37 159.5 107 72.9
Glyma.07G212900 Glycine max HOM05D003465 ORTHO05D004034 1.6e-37 159.5 108 70.4
Phvul.003G292000 Phaseolus vulgaris HOM05D003465 ORTHO05D004034 1.6e-37 159.5 107 71.0
VMungo0251G3162 Vigna mungo HOM05D003465 ORTHO05D004034 1.6e-37 159.5 107 70.1
Peaxi162Scf00016g01955 Petunia axillaris HOM05D003465 ORTHO05D004034 2.0e-37 159.1 108 69.4
AL3G32680 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 2.7e-37 158.7 108 69.4
Solyc01g108110.4 Solanum lycopersicum HOM05D003465 ORTHO05D004034 2.7e-37 158.7 108 69.4
Sopen01g050340 Solanum pennellii HOM05D003465 ORTHO05D004034 2.7e-37 158.7 108 69.4
CsaV3_3G018500 Cucumis sativus L. HOM05D003465 ORTHO05D004034 3.5e-37 158.3 108 69.4
HanXRQChr04g0128181 Helianthus annuus HOM05D003465 ORTHO05D004034 3.5e-37 158.3 107 70.1
PGSC0003DMG400025789 Solanum tuberosum HOM05D003465 ORTHO05D004034 3.5e-37 158.3 108 68.5
Aa31LG10G4340 Aethionema arabicum HOM05D003465 ORTHO05D004034 4.5e-37 157.9 107 70.1
Cc02_g18830 Coffea canephora HOM05D003465 ORTHO05D004034 4.5e-37 157.9 108 70.4
Nitab4.5_0003080g0100 Nicotiana tabacum HOM05D003465 ORTHO05D004034 4.5e-37 157.9 108 68.5
Nitab4.5_0003503g0030 Nicotiana tabacum HOM05D003465 ORTHO05D004034 4.5e-37 157.9 108 68.5
AT1G49710 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 5.9e-37 157.5 109 69.7
C05p45870 Brassica napus HOM05D003465 ORTHO05D004034 5.9e-37 157.5 107 71.0
CAN.G1041.31 Capsicum annuum HOM05D003465 ORTHO05D004034 5.9e-37 157.5 108 68.5
CARHR094680 Cardamine hirsuta HOM05D003465 ORTHO05D004034 5.9e-37 157.5 108 70.4
MELO3C018453.2 Cucumis melo HOM05D003465 ORTHO05D004034 5.9e-37 157.5 111 68.5
SHI05356 Sapria himalayana HOM05D003465 ORTHO05D004034 5.9e-37 157.5 107 71.0
A05p30320 Brassica napus HOM05D003465 ORTHO05D004034 7.7e-37 157.1 107 71.0
C08p03870 Brassica napus HOM05D003465 ORTHO05D004034 7.7e-37 157.1 109 71.6
Sed0008599 Sechium edule HOM05D003465 ORTHO05D004034 7.7e-37 157.1 111 69.4
CsaV3_7G008560 Cucumis sativus L. HOM05D003465 ORTHO05D004034 1.3e-36 156.4 111 67.6
DCAR_019244 Daucus carota HOM05D003465 ORTHO05D004034 1.7e-36 156.0 107 69.2
BcaB04g17304 Brassica carinata HOM05D003465 ORTHO05D004034 2.2e-36 155.6 109 69.7
SalBow6G3816 Salvia bowleyana HOM05D003465 ORTHO05D004034 2.2e-36 155.6 107 69.2
MELO3C019516.2 Cucumis melo HOM05D003465 ORTHO05D004034 2.9e-36 155.2 111 66.7
ATR0009G025 Amborella trichopoda HOM05D003465 ORTHO05D004034 5.0e-36 154.5 105 68.6
BolC8t47184H Brassica oleracea HOM05D003465 ORTHO05D004034 5.0e-36 154.5 109 70.6
ClCG02G005960 Citrullus lanatus HOM05D003465 ORTHO05D004034 5.0e-36 154.5 111 65.8
Gohir.A01G007100 Gossypium hirsutum HOM05D003465 ORTHO05D004034 6.5e-36 154.1 106 69.8
CAN.G1707.1 Capsicum annuum HOM05D003465 ORTHO05D004034 1.1e-35 153.3 107 69.2
SEGI_41455 Sequoiadendron giganteum HOM05D003465 ORTHO05D004034 1.1e-35 153.3 108 63.9
Aqoxy6G01316 Aquilegia oxysepala HOM05D003465 ORTHO05D004034 1.5e-35 152.9 108 67.6
Eucgr.I01147 Eucalyptus grandis HOM05D003465 ORTHO05D004034 1.5e-35 152.9 116 68.1
CSS0046899 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 1.9e-35 152.5 107 72.0
Gorai.002G008200 Gossypium raimondii HOM05D003465 ORTHO05D004034 3.2e-35 151.8 107 68.2
BraA05t21870Z Brassica rapa HOM05D003465 ORTHO05D004034 7.2e-35 150.6 119 64.7
HanXRQChr16g0497621 Helianthus annuus HOM05D003465 ORTHO05D004034 7.2e-35 150.6 108 65.7
Lj5A209T84 Lonicera japonica HOM05D003465 ORTHO05D004034 7.2e-35 150.6 93 75.3
BolC5t33305H Brassica oleracea HOM05D003465 ORTHO05D004034 1.2e-34 149.8 116 65.5
PGR142G0601 Punica granatum HOM05D003465 ORTHO05D004034 3.6e-34 148.3 116 67.2
Actinidia12946 Actinidia chinensis HOM05D003465 ORTHO05D004034 2.3e-33 145.6 92 75.0
Zm00001eb038040 Zea mays HOM05D003465 ORTHO05D004034 3.0e-33 145.2 107 62.6
Os08g0472600 Oryza sativa ssp. japonica HOM05D003465 ORTHO05D004034 5.2e-33 144.4 108 62.0
Zm00001eb176710 Zea mays HOM05D003465 ORTHO05D004034 5.2e-33 144.4 107 61.7
unitig_744.g24234 Utricularia gibba HOM05D003465 ORTHO05D004034 1.2e-32 143.3 108 62.0
Sc18g0004110 Simmondsia chinensis HOM05D003465 ORTHO05D004034 2.6e-32 142.1 107 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1554 Anthoceros agrestis HOM05D003465 ORTHO05D004034 9.8e-32 140.2 107 63.6
SMO367G1219 Selaginella moellendorffii HOM05D003465 ORTHO05D004034 1.7e-31 139.4 113 56.6
CDE08G1252 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 2.4e-30 135.6 108 71.3
BcaC05g28503 Brassica carinata HOM05D003465 ORTHO05D004034 5.4e-30 134.4 107 63.6
Mapoly0164s0009 Marchantia polymorpha HOM05D003465 ORTHO05D004034 5.4e-30 134.4 109 56.9
HanXRQChr09g0260741 Helianthus annuus HOM05D003465 ORTHO05D004034 2.9e-28 128.6 89 68.5
Lsat_1_v5_gn_5_112540 Lactuca sativa HOM05D003465 ORTHO05D004034 5.0e-28 127.9 108 63.9
Pp3c11_22030 Physcomitrium patens HOM05D003465 ORTHO05D004034 5.0e-28 127.9 108 56.5
Oeu025579.1 Olea europaea HOM05D003465 ORTHO05D004034 7.3e-27 124.0 122 55.7
CBR_g39363 Chara braunii HOM05D003465 ORTHO05D004034 3.6e-26 121.7 119 53.8
CBR_g30510 Chara braunii HOM05D003465 ORTHO05D004034 6.1e-26 120.9 112 54.5
Lj9C358T1 Lonicera japonica HOM05D003465 ORTHO05D004034 8.9e-25 117.1 86 65.1
Psat1g011840 Pisum sativum HOM05D003465 ORTHO05D004034 3.7e-15 85.1 58 67.2
CBR_g40329 Chara braunii HOM05D003465 ORTHO05D004034 8.3e-15 84.0 121 37.2
QL11p035291 Quercus lobata HOM05D003465 ORTHO05D004034 5.0e-12 74.7 62 56.5
Potri.019G091200 Populus trichocarpa HOM05D003465 ORTHO05D004034 1.5e-11 73.2 68 55.9
Lsat_1_v5_gn_9_109780 Lactuca sativa HOM05D003465 ORTHO05D004034 1.1e-09 67.0 49 65.3


User provided reference genes

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