Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.2e-113 411.8 210 100.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.4e-68 261.5 224 62.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.4e-68 261.5 224 62.5
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.6e-67 260.0 223 62.3
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.5e-67 258.8 224 62.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.3e-66 256.1 223 63.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.3e-65 251.9 223 60.5
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.3e-65 251.9 223 61.4
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 7.3e-65 251.1 223 60.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.6e-64 250.0 223 60.1
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 4.7e-64 248.4 224 60.3
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.1e-63 247.3 223 58.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-63 247.3 223 58.7
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.4e-63 246.9 223 60.5
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 3.1e-63 245.7 222 59.5
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 4.0e-63 245.4 223 59.2
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 5.2e-63 245.0 223 59.6
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 8.9e-63 244.2 223 59.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.2e-62 243.8 223 58.3
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.2e-62 243.8 223 59.2
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-62 243.0 223 58.3
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 2.6e-62 242.7 223 60.5
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 4.4e-62 241.9 225 60.0
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 5.8e-62 241.5 223 59.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.6e-62 241.1 223 58.3
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 9.9e-62 240.7 223 58.3
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.9e-62 240.7 224 60.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 9.9e-62 240.7 223 56.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.3e-61 240.4 224 60.3
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.9e-61 239.2 223 58.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.8e-61 238.8 223 58.3
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 3.8e-61 238.8 223 57.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.9e-61 238.4 223 57.4
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.9e-61 238.4 223 57.8
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.4e-61 238.0 223 58.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 8.4e-61 237.7 224 55.8
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.4e-60 236.9 223 56.5
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-60 236.9 224 59.4
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.9e-60 236.5 223 57.8
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.9e-60 236.5 223 60.1
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.4e-60 236.1 225 59.6
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 3.2e-60 235.7 223 61.0
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 4.2e-60 235.3 223 56.5
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 4.2e-60 235.3 223 57.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 4.2e-60 235.3 223 56.5
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 5.4e-60 235.0 223 59.6
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 7.1e-60 234.6 223 56.5
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 7.1e-60 234.6 223 57.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.2e-59 233.8 224 58.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.6e-59 233.4 223 58.7
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.6e-59 233.4 223 58.3
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.1e-59 233.0 223 56.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.7e-59 232.6 220 57.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.7e-59 232.6 223 58.7
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.6e-59 231.9 223 59.2
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.0e-58 230.7 223 56.5
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.0e-58 230.7 222 56.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.0e-58 230.7 226 58.4
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.3e-58 229.6 223 55.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.9e-58 228.8 223 55.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 8.7e-58 227.6 223 55.6
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.5e-57 226.9 223 55.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.9e-57 226.5 223 56.1
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.9e-57 226.5 223 55.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.5e-57 226.1 225 56.9
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.5e-57 226.1 224 58.5
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 2.5e-57 226.1 223 55.6
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.3e-57 225.7 223 56.5
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.3e-57 225.3 223 56.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 5.6e-57 224.9 223 54.7
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 5.6e-57 224.9 223 54.3
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 5.6e-57 224.9 223 54.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 5.6e-57 224.9 223 54.3
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 7.3e-57 224.6 224 58.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.3e-56 223.8 223 56.5
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-56 223.8 223 55.2
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.3e-56 223.8 223 56.1
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.3e-56 223.8 223 56.1
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.6e-56 223.4 225 56.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-56 223.4 223 56.1
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.6e-56 223.4 223 57.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.6e-56 223.4 223 55.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.1e-56 223.0 223 56.1
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.8e-56 222.6 217 60.4
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.6e-56 222.2 223 54.3
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.8e-56 221.9 224 55.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.2e-56 221.5 224 57.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 6.2e-56 221.5 223 54.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.1e-55 220.7 223 56.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.8e-55 219.9 223 54.7
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-55 219.9 225 53.3
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.4e-55 219.5 225 56.0
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 4.0e-55 218.8 222 55.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 5.3e-55 218.4 223 55.6
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.0e-54 216.5 220 54.5
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 5.8e-54 214.9 225 53.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.3e-53 213.8 224 53.6
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 8.4e-53 211.1 223 55.6
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.1e-51 206.5 228 51.8
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.5e-51 205.7 160 66.2
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 6.0e-51 204.9 208 56.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.0e-51 204.9 225 52.9
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 3.9e-50 202.2 225 53.3
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 6.6e-50 201.4 223 52.5
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.7e-50 201.1 223 52.9
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-49 200.7 189 57.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.5e-49 199.5 228 54.4
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 2.5e-49 199.5 223 52.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.3e-48 197.2 233 48.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.1e-48 196.4 223 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.8e-48 196.1 226 48.2
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.4e-47 193.0 223 49.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.5e-46 190.3 224 50.9
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 2.6e-46 189.5 178 56.7
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.4e-44 183.0 199 54.3
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.2e-44 182.6 153 60.8
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 9.3e-44 181.0 220 49.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.6e-43 178.7 224 48.2
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 3.3e-41 172.6 226 45.6
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.3e-41 172.2 190 52.6
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.1e-40 169.9 143 62.2
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-39 167.5 128 62.5
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.0e-39 165.6 206 46.6
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.8e-38 161.8 232 47.8
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.2e-37 159.8 194 49.5
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.9e-37 159.5 196 48.5
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.9e-37 159.5 215 45.6
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.9e-37 159.5 215 45.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.2e-36 155.6 192 51.0
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.2e-35 154.1 241 42.7
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.6e-35 153.7 172 51.2
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.5e-33 146.4 131 55.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 5.7e-33 145.2 195 45.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.5e-30 135.6 136 50.7
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.3e-29 134.0 201 44.3
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.8e-29 132.5 126 58.7
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.4e-28 130.6 162 43.2
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 4.2e-28 129.0 229 42.4
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-27 127.1 185 49.2
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 5.1e-26 122.1 132 51.5
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 5.1e-26 122.1 132 51.5
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 5.1e-26 122.1 132 51.5
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 4.3e-25 119.0 133 45.9
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.9e-23 111.7 94 59.6
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.6e-22 109.8 114 56.1
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 5.9e-22 108.6 51 86.3
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.3e-21 107.5 124 55.6
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.8e-21 105.9 187 40.6
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 8.5e-21 104.8 122 59.8
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 5.5e-20 102.1 124 49.2
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.9e-18 95.9 128 39.8
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-17 94.4 102 53.9
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.3e-17 92.4 50 74.0
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.7e-16 89.4 60 70.0
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.4e-15 87.4 111 45.0
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-15 87.4 134 47.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.2e-14 84.3 40 80.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.7e-13 80.5 43 65.1
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.9e-12 77.0 74 55.4
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 2.1e-11 73.6 35 82.9
CDE08G0618 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 6.7e-10 68.6 42 85.7
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.2e-08 63.5 29 86.2
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 4.8e-08 62.4 89 46.1
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 5.3e-07 58.9 96 38.5
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.0e-07 58.5 56 55.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-06 57.8 46 56.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.6e-06 56.6 95 44.2


User provided reference genes

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