Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.4e-124 449.5 212 100.0
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.7e-122 442.6 212 98.1
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.7e-109 399.4 212 85.8
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 4.3e-105 384.8 210 82.9
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 5.6e-105 384.4 211 81.5
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.6e-104 382.9 209 81.8
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 8.1e-104 380.6 208 81.7
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 3.1e-103 378.6 209 82.3
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 5.2e-103 377.9 209 80.9
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.2e-102 376.7 210 81.4
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.0e-102 375.9 209 80.4
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 7.6e-102 374.0 208 82.7
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 1.3e-101 373.2 208 80.8
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.3e-101 373.2 203 81.8
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.2e-101 372.5 209 79.9
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.9e-101 371.3 210 79.0
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 6.4e-101 370.9 210 79.5
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.1e-100 370.2 210 78.1
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.1e-100 370.2 209 80.9
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 1.1e-100 370.2 210 78.6
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.4e-100 369.8 198 84.3
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.9e-100 369.4 212 77.8
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.4e-100 369.0 210 79.5
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 3.2e-100 368.6 209 79.4
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 5.4e-100 367.9 210 77.6
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 7.1e-100 367.5 208 78.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 7.1e-100 367.5 212 79.2
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.6e-99 366.3 210 78.6
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 209 78.9
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.1e-99 365.9 210 79.0
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.1e-99 365.9 210 79.5
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.7e-99 365.5 210 79.0
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.7e-99 365.5 209 78.0
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.7e-99 365.5 206 80.1
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.6e-99 364.8 209 78.0
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 7.8e-99 364.0 209 79.4
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 7.8e-99 364.0 218 77.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 1.0e-98 363.6 206 79.6
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 77.9
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.3e-98 363.2 209 78.9
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 209 78.0
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 209 78.0
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 77.9
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 3.9e-98 361.7 208 78.8
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 3.9e-98 361.7 210 76.2
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-97 360.1 209 78.0
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.1e-97 360.1 208 77.9
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.5e-97 359.8 208 77.4
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.9e-97 359.4 208 76.0
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.9e-97 359.4 209 77.5
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 2.5e-97 359.0 208 78.4
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.3e-97 357.5 210 78.1
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 9.6e-97 357.1 208 79.3
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 4.7e-96 354.8 206 77.2
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 4.7e-96 354.8 209 78.0
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 6.2e-96 354.4 210 75.2
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.1e-95 353.6 208 78.8
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.4e-95 353.2 208 76.0
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.8e-95 352.8 204 77.5
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 3.1e-95 352.1 208 76.9
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 3.1e-95 352.1 208 74.5
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 4.0e-95 351.7 193 80.8
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 4.0e-95 351.7 202 78.2
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 6.8e-95 350.9 231 71.4
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 76.4
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 8.9e-95 350.5 212 73.6
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 76.4
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 1.5e-94 349.7 209 74.6
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.5e-94 349.7 210 74.3
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 2.0e-94 349.4 208 76.4
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 3.4e-94 348.6 212 72.6
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.4e-94 348.6 209 75.1
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 4.4e-94 348.2 208 75.5
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 7.6e-94 347.4 207 74.9
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 7.6e-94 347.4 209 74.2
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 9.9e-94 347.1 217 75.6
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 9.9e-94 347.1 208 74.0
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 1.3e-93 346.7 210 73.8
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.7e-93 346.3 211 73.5
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.7e-93 346.3 210 75.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 1.7e-93 346.3 210 74.8
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.2e-93 345.9 210 75.2
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 2.2e-93 345.9 211 74.9
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 2.2e-93 345.9 208 75.5
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 2.9e-93 345.5 206 72.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 3.8e-93 345.1 212 73.1
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.9e-93 344.7 210 74.8
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.9e-93 344.7 210 74.8
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 6.4e-93 344.4 210 74.3
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.4e-93 344.0 210 74.8
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 8.4e-93 344.0 205 74.1
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.1e-92 343.6 208 74.5
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.9e-92 342.8 206 73.3
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 2.4e-92 342.4 206 72.3
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.4e-92 342.4 206 72.3
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.4e-92 342.4 230 68.7
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 3.2e-92 342.0 210 73.3
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 4.2e-92 341.7 205 75.6
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.4e-92 341.3 206 72.3
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 7.1e-92 340.9 212 71.2
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 2.7e-91 339.0 205 76.1
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 2.7e-91 339.0 212 71.2
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 3.5e-91 338.6 204 73.5
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.5e-91 338.6 204 73.5
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.5e-91 338.6 204 73.5
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 4.6e-91 338.2 204 73.5
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.3e-90 336.7 206 72.8
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 3.3e-89 332.0 209 72.2
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.8e-88 328.9 295 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 4.8e-88 328.2 202 71.8
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 4.8e-88 328.2 208 70.7
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 2.6e-86 322.4 250 63.2
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.6e-86 322.4 166 86.1
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 3.2e-84 315.5 207 67.6
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 7.1e-84 314.3 211 68.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 3.9e-82 308.5 174 79.3
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 3.9e-82 308.5 207 66.2
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 5.6e-81 304.7 169 80.5
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.6e-81 304.7 211 69.2
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.2e-70 270.4 205 64.4
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.1e-68 263.8 424 38.4
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 1.2e-67 260.4 171 72.5
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 1.1e-65 253.8 145 76.6
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 4.3e-65 251.9 145 75.2
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 4.3e-65 251.9 145 75.2
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.7e-56 222.2 138 74.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 1.7e-53 213.4 113 83.2
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.3e-45 187.2 109 79.8
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.2e-45 186.4 198 48.0
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 6.5e-45 184.9 195 43.6
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.1e-43 179.9 125 67.2
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.0e-41 173.3 88 87.5
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 8.2e-40 167.9 195 44.6
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.2e-37 159.8 97 73.2
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 9.4e-36 154.5 167 47.9
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 5.7e-33 145.2 74 83.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 6.3e-32 141.7 79 81.0
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.8e-31 140.2 95 65.3
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 4.2e-20 102.4 67 65.7
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.8e-18 97.1 74 59.5
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.2e-17 94.4 59 71.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.3e-16 88.6 60 68.3
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 1.1e-15 87.8 63 61.9
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 2.0e-09 67.0 35 80.0
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 2.6e-09 66.6 40 75.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 3.4e-09 66.2 35 82.9
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 2.9e-08 63.2 60 55.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 4.1e-07 59.3 32 75.0


User provided reference genes

Program Settings