Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0915 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 1.1e-36 156.0 73 100.0
CDE02G2660 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 2.0e-14 82.0 47 87.2
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 2.8e-11 71.6 44 72.7
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 2.8e-11 71.6 41 78.0
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 2.8e-11 71.6 42 73.8
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 3.6e-11 71.2 41 80.5
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 3.6e-11 71.2 41 80.5
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 3.6e-11 71.2 41 80.5
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 3.6e-11 71.2 47 76.6
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 4.7e-11 70.9 45 68.9
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 4.7e-11 70.9 48 72.9
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 4.7e-11 70.9 45 64.4
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 4.7e-11 70.9 45 64.4
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 4.7e-11 70.9 45 64.4
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 4.7e-11 70.9 44 72.7
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 6.1e-11 70.5 38 81.6
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 6.1e-11 70.5 38 81.6
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 8.0e-11 70.1 46 69.6
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 8.0e-11 70.1 46 69.6
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 8.0e-11 70.1 46 69.6
QL02p076199 Quercus lobata HOM05D004475 ORTHO05D005235 8.0e-11 70.1 38 81.6
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 8.0e-11 70.1 38 81.6
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 1.0e-10 69.7 38 84.2
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 1.0e-10 69.7 41 78.0
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 1.4e-10 69.3 40 75.0
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 1.8e-10 68.9 43 72.1
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 1.8e-10 68.9 38 81.6
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 1.8e-10 68.9 38 81.6
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 1.8e-10 68.9 38 81.6
QL07p004140 Quercus lobata HOM05D004475 ORTHO05D005235 2.3e-10 68.6 38 78.9
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 2.3e-10 68.6 41 73.2
Sopen10g029910 Solanum pennellii HOM05D004475 ORTHO05D005235 2.3e-10 68.6 41 73.2
CSS0030492 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 3.1e-10 68.2 38 78.9
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 3.1e-10 68.2 38 78.9
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 4.0e-10 67.8 38 76.3
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 4.0e-10 67.8 38 76.3
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 4.0e-10 67.8 41 70.7
Nitab4.5_0001618g0210 Nicotiana tabacum HOM05D004475 ORTHO05D005235 4.0e-10 67.8 41 68.3
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 4.0e-10 67.8 38 76.3
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 4.0e-10 67.8 41 70.7
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 5.2e-10 67.4 44 70.5
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 6.8e-10 67.0 41 73.2
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 6.8e-10 67.0 41 70.7
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 6.8e-10 67.0 45 66.7
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 6.8e-10 67.0 38 76.3
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 8.9e-10 66.6 38 73.7
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 8.9e-10 66.6 38 78.9
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 1.2e-09 66.2 40 67.5
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 1.2e-09 66.2 43 72.1
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 1.2e-09 66.2 41 73.2
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 1.5e-09 65.9 38 76.3
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 1.5e-09 65.9 43 67.4
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 1.5e-09 65.9 38 73.7
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 1.5e-09 65.9 47 70.2
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 1.5e-09 65.9 38 76.3
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 2.0e-09 65.5 38 76.3
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 2.0e-09 65.5 38 76.3
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 2.0e-09 65.5 38 73.7
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-09 65.5 44 63.6
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 2.0e-09 65.5 38 71.1
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 2.0e-09 65.5 40 67.5
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 2.0e-09 65.5 38 76.3
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 2.0e-09 65.5 38 76.3
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
BcaC02g09926 Brassica carinata HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 3.4e-09 64.7 38 76.3
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 4.4e-09 64.3 47 66.0
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 4.4e-09 64.3 38 76.3
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 4.4e-09 64.3 38 76.3
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 5.8e-09 63.9 38 71.1
Ca_22428_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 5.8e-09 63.9 43 65.1
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 5.8e-09 63.9 38 73.7
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 7.5e-09 63.5 40 67.5
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 7.5e-09 63.5 38 76.3
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 7.5e-09 63.5 41 65.9
Psat3g074880 Pisum sativum HOM05D004475 ORTHO05D005235 9.8e-09 63.2 38 73.7
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 1.3e-08 62.8 38 76.3
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 1.3e-08 62.8 38 76.3
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 1.3e-08 62.8 38 71.1
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 1.7e-08 62.4 38 76.3
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 1.7e-08 62.4 38 71.1
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 1.7e-08 62.4 43 65.1
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 2.9e-08 61.6 38 73.7
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 3.7e-08 61.2 38 71.1
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 3.7e-08 61.2 38 71.1
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 3.7e-08 61.2 38 71.1
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 3.7e-08 61.2 38 68.4
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 3.7e-08 61.2 47 63.8
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 4.9e-08 60.8 38 71.1
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 6.4e-08 60.5 47 63.8
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 6.4e-08 60.5 42 64.3
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 8.3e-08 60.1 45 62.2
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 8.3e-08 60.1 38 71.1
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 8.3e-08 60.1 38 71.1
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 1.4e-07 59.3 38 68.4
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 1.4e-07 59.3 40 67.5
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 1.4e-07 59.3 43 60.5
HanXRQChr08g0209421 Helianthus annuus HOM05D004475 ORTHO05D005235 1.4e-07 59.3 43 60.5
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.4e-07 59.3 40 70.0
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 1.4e-07 59.3 45 62.2
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 1.9e-07 58.9 38 71.1
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 3.2e-07 58.2 43 58.1
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 5.4e-07 57.4 45 55.6
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 5.4e-07 57.4 38 68.4
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 5.4e-07 57.4 68 47.1
BraA04t16044Z Brassica rapa HOM05D004475 ORTHO05D005235 7.0e-07 57.0 49 59.2
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 1.6e-06 55.8 41 61.0
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 2.0e-06 55.5 37 64.9
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 3.5e-06 54.7 45 60.0
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 4.6e-06 54.3 31 77.4
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 7.8e-06 53.5 28 78.6
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 7.8e-06 53.5 38 65.8


User provided reference genes

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