Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 2.0e-121 439.1 220 100.0
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.2e-62 243.8 174 71.3
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 2.2e-59 233.0 189 60.8
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.8e-59 232.6 184 64.1
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 8.2e-59 231.1 164 70.7
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 9.1e-58 227.6 164 69.5
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 2.0e-57 226.5 161 70.2
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 2.0e-57 226.5 161 68.9
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 2.0e-57 226.5 149 73.8
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 2.6e-57 226.1 169 66.9
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 1.3e-56 223.8 164 67.7
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 3.8e-56 222.2 159 67.3
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 6.5e-56 221.5 161 66.5
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 6.5e-56 221.5 159 66.7
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 1.1e-55 220.7 164 65.9
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.1e-55 220.7 150 68.0
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 2.5e-55 219.5 156 68.6
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 3.2e-55 219.2 159 66.7
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 3.2e-55 219.2 186 61.8
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 3.2e-55 219.2 182 61.0
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 3.2e-55 219.2 156 68.6
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 9.4e-55 217.6 184 61.4
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 9.4e-55 217.6 158 67.7
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.2e-54 217.2 166 64.5
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 2.1e-54 216.5 156 68.6
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 2.1e-54 216.5 144 72.9
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 2.7e-54 216.1 179 62.0
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 2.7e-54 216.1 177 62.1
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 2.7e-54 216.1 170 61.8
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 2.7e-54 216.1 155 68.4
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 2.7e-54 216.1 170 64.1
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.6e-54 215.7 156 65.4
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 3.6e-54 215.7 167 62.3
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 4.7e-54 215.3 156 66.0
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.7e-54 215.3 156 66.0
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 4.7e-54 215.3 156 65.4
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 4.7e-54 215.3 156 65.4
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 6.1e-54 214.9 177 62.1
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 6.1e-54 214.9 168 63.7
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 6.1e-54 214.9 159 65.4
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 7.9e-54 214.5 156 67.3
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 7.9e-54 214.5 165 64.2
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 7.9e-54 214.5 183 61.2
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 7.9e-54 214.5 161 66.5
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.0e-53 214.2 171 63.2
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.0e-53 214.2 159 67.9
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.4e-53 213.8 141 70.2
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.8e-53 213.4 156 67.3
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 2.3e-53 213.0 170 62.4
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 3.0e-53 212.6 160 65.6
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 3.9e-53 212.2 176 61.4
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 3.9e-53 212.2 164 65.2
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 3.9e-53 212.2 169 62.7
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 5.2e-53 211.8 192 56.8
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 5.2e-53 211.8 139 71.9
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 8.8e-53 211.1 156 66.0
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 1.1e-52 210.7 164 62.8
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.5e-52 210.3 181 60.2
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.5e-52 210.3 175 60.0
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 2.0e-52 209.9 156 62.8
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 2.0e-52 209.9 164 63.4
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 2.6e-52 209.5 164 62.8
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 3.3e-52 209.1 166 63.3
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 3.3e-52 209.1 183 56.3
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 3.3e-52 209.1 145 69.7
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.3e-52 209.1 140 69.3
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 3.3e-52 209.1 208 55.8
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 4.4e-52 208.8 166 61.4
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 5.7e-52 208.4 164 61.6
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 5.7e-52 208.4 176 60.8
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 5.7e-52 208.4 158 60.8
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 5.7e-52 208.4 167 61.7
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 9.7e-52 207.6 183 58.5
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 9.7e-52 207.6 156 62.8
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.7e-51 206.8 164 61.6
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 2.8e-51 206.1 155 62.6
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.7e-51 205.7 159 63.5
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.4e-50 203.8 169 60.9
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.8e-50 203.4 156 65.4
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.1e-50 202.6 156 62.2
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.1e-50 202.6 159 62.9
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 4.1e-50 202.2 156 62.2
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 4.1e-50 202.2 156 62.8
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.6e-49 200.3 213 51.2
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 1.6e-49 200.3 140 67.1
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 2.0e-49 199.9 168 57.7
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 2.6e-49 199.5 182 58.2
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.6e-49 199.5 159 62.9
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 3.5e-49 199.1 163 59.5
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 7.7e-49 198.0 156 63.5
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.0e-48 197.6 182 55.5
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 2.5e-47 193.0 159 63.5
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.2e-47 192.6 163 58.9
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 5.5e-47 191.8 173 57.8
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 1.2e-46 190.7 162 58.6
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.6e-46 190.3 163 55.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 1.6e-46 190.3 156 64.1
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.7e-46 189.5 145 63.4
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 2.7e-46 189.5 176 56.2
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 4.7e-46 188.7 142 62.0
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 8.0e-46 188.0 166 53.6
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.0e-45 187.6 156 63.5
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.8e-45 186.8 141 63.1
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.3e-45 186.4 146 63.7
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.7e-45 184.9 147 61.9
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.5e-44 183.7 141 61.0
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.5e-44 183.7 175 54.3
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 2.0e-44 183.3 190 54.7
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 9.7e-44 181.0 158 58.2
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 9.7e-44 181.0 155 56.1
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 9.7e-44 181.0 127 66.1
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.3e-43 180.6 149 62.4
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 4.8e-43 178.7 185 56.8
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.1e-42 177.6 145 60.0
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.8e-42 176.8 149 61.1
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 2.4e-42 176.4 144 59.0
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 3.1e-42 176.0 142 58.5
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.6e-41 173.7 127 63.8
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 7.7e-41 171.4 150 59.3
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 5.5e-39 165.2 145 60.0
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 5.7e-36 155.2 132 59.1
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 4.5e-33 145.6 121 61.2
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 4.2e-31 139.0 159 47.2
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 5.5e-31 138.7 102 68.6
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 5.5e-31 138.7 102 67.6
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 5.2e-29 132.1 118 57.6
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 6.8e-29 131.7 148 46.6
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 2.6e-28 129.8 121 55.4
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 2.8e-27 126.3 128 53.9
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 4.9e-27 125.6 98 61.2
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 6.6e-24 115.2 72 75.0
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 2.1e-22 110.2 145 44.8
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.4e-21 107.5 171 39.2
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.2e-20 104.4 192 35.4
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 2.6e-20 103.2 223 37.2
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 1.3e-19 100.9 88 55.7
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 8.0e-14 81.6 74 48.6
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.3e-13 80.1 77 53.2
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 3.1e-13 79.7 119 39.5
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 8.9e-13 78.2 94 45.7
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 1.3e-11 74.3 82 46.3
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.7e-11 73.9 55 61.8
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 1.9e-10 70.5 57 54.4


User provided reference genes

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