Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0858 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 7.4e-37 156.8 83 100.0
CDE02G4227 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 6.8e-14 80.5 45 91.1
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.9e-09 65.1 45 73.3
BraA07t29817Z Brassica rapa HOM05D000375 ORTHO05D000240 2.9e-09 65.1 45 73.3
Nn2g14050 Nelumbo nucifera HOM05D000375 ORTHO05D000240 2.9e-09 65.1 44 75.0
CiPaw.09G009800 Carya illinoinensis HOM05D000375 ORTHO05D000240 6.5e-09 63.9 45 71.1
Ca_08973_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 6.5e-09 63.9 45 71.1
Glyma.03G192200 Glycine max HOM05D000375 ORTHO05D000240 6.5e-09 63.9 46 67.4
Glyma.19G192700 Glycine max HOM05D000375 ORTHO05D000240 6.5e-09 63.9 46 67.4
Phvul.001G187500 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 6.5e-09 63.9 46 67.4
VMungo1383G3570 Vigna mungo HOM05D000375 ORTHO05D000240 6.5e-09 63.9 46 67.4
Nn6g35011 Nelumbo nucifera HOM05D000375 ORTHO05D000240 8.5e-09 63.5 44 72.7
Lj1g0022211 Lotus japonicus HOM05D000375 ORTHO05D000240 1.1e-08 63.2 45 68.9
Oeu039815.1 Olea europaea HOM05D000375 ORTHO05D000240 1.5e-08 62.8 45 64.4
Eucgr.A01534 Eucalyptus grandis HOM05D000375 ORTHO05D000240 1.9e-08 62.4 46 65.2
Medtr7g104050 Medicago truncatula HOM05D000375 ORTHO05D000240 1.9e-08 62.4 47 72.3
Psat3g034600 Pisum sativum HOM05D000375 ORTHO05D000240 1.9e-08 62.4 47 72.3
SGA_v2.0_scaffold184G39943 Striga asiatica HOM05D000375 ORTHO05D000240 1.9e-08 62.4 46 65.2
TAR636G1689 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.9e-08 62.4 45 68.9
BolC8t50429H Brassica oleracea HOM05D000375 ORTHO05D000240 3.2e-08 61.6 41 75.6
Cfa016559 Carpinus fangiana HOM05D000375 ORTHO05D000240 3.2e-08 61.6 45 66.7
Ciclev10011856m.g Citrus clementina HOM05D000375 ORTHO05D000240 3.2e-08 61.6 47 70.2
Sopen09g003930 Solanum pennellii HOM05D000375 ORTHO05D000240 3.2e-08 61.6 49 67.3
BcaC08g44606 Brassica carinata HOM05D000375 ORTHO05D000240 4.2e-08 61.2 45 68.9
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 4.2e-08 61.2 45 68.9
BolC6t37262H Brassica oleracea HOM05D000375 ORTHO05D000240 4.2e-08 61.2 45 68.9
CARHR162790 Cardamine hirsuta HOM05D000375 ORTHO05D000240 4.2e-08 61.2 47 68.1
Haze_19561 Corylus avellana HOM05D000375 ORTHO05D000240 4.2e-08 61.2 45 66.7
Thhalv10010453m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 4.2e-08 61.2 41 75.6
THA.LOC104823461 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 4.2e-08 61.2 43 69.8
AL5G33700 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 5.5e-08 60.8 43 69.8
Duzib128G0614 Durio zibethinus HOM05D000375 ORTHO05D000240 5.5e-08 60.8 45 66.7
MD12G1020500 Malus domestica HOM05D000375 ORTHO05D000240 5.5e-08 60.8 46 63.0
PSO443G0062 Papaver somniferum HOM05D000375 ORTHO05D000240 5.5e-08 60.8 43 65.1
Sc20g0006130 Simmondsia chinensis HOM05D000375 ORTHO05D000240 5.5e-08 60.8 45 64.4
arahy.Tifrunner.gnm1.ann1.G4PR1G Arachis hypogaea HOM05D000375 ORTHO05D000240 7.2e-08 60.5 47 68.1
arahy.Tifrunner.gnm1.ann1.KV1X6M Arachis hypogaea HOM05D000375 ORTHO05D000240 7.2e-08 60.5 47 68.1
BcaB02g08547 Brassica carinata HOM05D000375 ORTHO05D000240 7.2e-08 60.5 46 65.2
FvH4_6g18130 Fragaria vesca HOM05D000375 ORTHO05D000240 7.2e-08 60.5 46 63.0
FAN05G1340 Fragaria x ananassa HOM05D000375 ORTHO05D000240 7.2e-08 60.5 46 63.0
FAN05G2461 Fragaria x ananassa HOM05D000375 ORTHO05D000240 7.2e-08 60.5 46 63.0
FAN14G1098 Fragaria x ananassa HOM05D000375 ORTHO05D000240 7.2e-08 60.5 46 63.0
Lalb_Chr25g0288591 Lupinus albus HOM05D000375 ORTHO05D000240 7.2e-08 60.5 45 68.9
THA.LOC104805065 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 7.2e-08 60.5 43 67.4
Aqoxy2G01355 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 9.4e-08 60.1 41 73.2
AT3G52910 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 9.4e-08 60.1 43 69.8
BcaC07g39654 Brassica carinata HOM05D000375 ORTHO05D000240 9.4e-08 60.1 38 78.9
C08p28160 Brassica napus HOM05D000375 ORTHO05D000240 9.4e-08 60.1 38 78.9
FAN02G1892 Fragaria x ananassa HOM05D000375 ORTHO05D000240 9.4e-08 60.1 46 63.0
Manes.08G022300 Manihot esculenta HOM05D000375 ORTHO05D000240 9.4e-08 60.1 42 69.0
Manes.09G058720 Manihot esculenta HOM05D000375 ORTHO05D000240 9.4e-08 60.1 42 69.0
PSO339G4506 Papaver somniferum HOM05D000375 ORTHO05D000240 9.4e-08 60.1 46 71.7
PSO384G2151 Papaver somniferum HOM05D000375 ORTHO05D000240 9.4e-08 60.1 46 71.7
QL07p040017 Quercus lobata HOM05D000375 ORTHO05D000240 9.4e-08 60.1 46 65.2
Cpa.g.sc5.63 Carica papaya HOM05D000375 ORTHO05D000240 1.2e-07 59.7 47 66.0
FAN09G3221 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.2e-07 59.7 46 60.9
Solyc09g009200.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 1.2e-07 59.7 49 67.3
TAR633G1342 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.2e-07 59.7 44 65.9
MSTRG.26647 Avicennia marina HOM05D000375 ORTHO05D000240 1.6e-07 59.3 52 61.5
BcaB01g00330 Brassica carinata HOM05D000375 ORTHO05D000240 1.6e-07 59.3 41 73.2
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.6e-07 59.3 46 65.2
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.6e-07 59.3 46 65.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.6e-07 59.3 46 65.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.6e-07 59.3 46 65.2
BraA04t16362Z Brassica rapa HOM05D000375 ORTHO05D000240 1.6e-07 59.3 46 65.2
Lalb_Chr20g0112111 Lupinus albus HOM05D000375 ORTHO05D000240 1.6e-07 59.3 47 63.8
RcHm_v2.0_Chr3g0472411 Rosa chinensis HOM05D000375 ORTHO05D000240 1.6e-07 59.3 46 60.9
Sp5g09420 Schrenkiella parvula HOM05D000375 ORTHO05D000240 1.6e-07 59.3 41 73.2
HPP92_011894 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.6e-07 59.3 49 61.2
GSVIVG01033800001 Vitis vinifera HOM05D000375 ORTHO05D000240 1.6e-07 59.3 42 69.0
Aa31LG5G21580 Aethionema arabicum HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
AL4G32560 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
AT2G36400 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BcaB01g03841 Brassica carinata HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BcaB06g28936 Brassica carinata HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BcaC02g07600 Brassica carinata HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
A03p20110 Brassica napus HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
A04p27910 Brassica napus HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
A05p09370 Brassica napus HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
C03p23540 Brassica napus HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BolC3t14750H Brassica oleracea HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BolC4t28021H Brassica oleracea HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BraA03t11261Z Brassica rapa HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BraA04t18282Z Brassica rapa HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
BraA05t19896Z Brassica rapa HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
Carub.0005s1939 Capsella rubella HOM05D000375 ORTHO05D000240 2.1e-07 58.9 44 68.2
CARHR130700 Cardamine hirsuta HOM05D000375 ORTHO05D000240 2.1e-07 58.9 43 67.4
SalBow5G1012 Salvia bowleyana HOM05D000375 ORTHO05D000240 2.1e-07 58.9 46 60.9
SHI23940 Sapria himalayana HOM05D000375 ORTHO05D000240 2.1e-07 58.9 46 65.2
MSTRG.10355 Avicennia marina HOM05D000375 ORTHO05D000240 2.7e-07 58.5 45 57.8
Dinv21241 Davidia involucrata HOM05D000375 ORTHO05D000240 2.7e-07 58.5 45 64.4
MD14G1017600 Malus domestica HOM05D000375 ORTHO05D000240 2.7e-07 58.5 47 63.8
Sp4g18690 Schrenkiella parvula HOM05D000375 ORTHO05D000240 2.7e-07 58.5 43 67.4
SGA_v2.0_scaffold13G06773 Striga asiatica HOM05D000375 ORTHO05D000240 2.7e-07 58.5 43 62.8
TPR.G19535 Trifolium pratense HOM05D000375 ORTHO05D000240 2.7e-07 58.5 43 69.8
BcaB02g09355 Brassica carinata HOM05D000375 ORTHO05D000240 3.6e-07 58.2 43 65.1
CAN.G824.18 Capsicum annuum HOM05D000375 ORTHO05D000240 3.6e-07 58.2 44 68.2
CiPaw.10G006500 Carya illinoinensis HOM05D000375 ORTHO05D000240 3.6e-07 58.2 43 62.8
Peaxi162Scf00068g00018 Petunia axillaris HOM05D000375 ORTHO05D000240 3.6e-07 58.2 47 61.7
Peaxi162Scf00163g00419 Petunia axillaris HOM05D000375 ORTHO05D000240 3.6e-07 58.2 45 60.0
TWI74G1130 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 3.6e-07 58.2 47 61.7
Aa31LG10G8090 Aethionema arabicum HOM05D000375 ORTHO05D000240 4.7e-07 57.8 42 69.0
Gohir.A09G137600 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.7e-07 57.8 49 65.3
Gorai.006G157300 Gossypium raimondii HOM05D000375 ORTHO05D000240 4.7e-07 57.8 49 65.3
Oeu040806.1 Olea europaea HOM05D000375 ORTHO05D000240 4.7e-07 57.8 44 61.4
Atru.chr8.1613 Acer truncatum HOM05D000375 ORTHO05D000240 6.1e-07 57.4 47 63.8
BcaC01g05661 Brassica carinata HOM05D000375 ORTHO05D000240 6.1e-07 57.4 40 70.0
BcaC02g11756 Brassica carinata HOM05D000375 ORTHO05D000240 6.1e-07 57.4 40 70.0
C04p11680 Brassica napus HOM05D000375 ORTHO05D000240 6.1e-07 57.4 40 70.0
BolC4t22817H Brassica oleracea HOM05D000375 ORTHO05D000240 6.1e-07 57.4 40 70.0
CANSAT51G0007 Cannabis sativa HOM05D000375 ORTHO05D000240 6.1e-07 57.4 49 63.3
Nitab4.5_0004686g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 6.1e-07 57.4 45 64.4
Thhalv10016778m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 8.0e-07 57.0 43 65.1
unitig_8.g4145 Utricularia gibba HOM05D000375 ORTHO05D000240 1.0e-06 56.6 45 64.4
HPP92_013800 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.0e-06 56.6 42 59.5
A09p45970 Brassica napus HOM05D000375 ORTHO05D000240 1.4e-06 56.2 41 73.2
BraA09t40058Z Brassica rapa HOM05D000375 ORTHO05D000240 1.4e-06 56.2 41 73.2
CAN.G1039.19 Capsicum annuum HOM05D000375 ORTHO05D000240 1.4e-06 56.2 45 57.8
AUR62043106 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.4e-06 56.2 45 64.4
ClCG10G019220 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.4e-06 56.2 48 62.5
PGR004G0222 Punica granatum HOM05D000375 ORTHO05D000240 1.4e-06 56.2 48 60.4
Glyma.10G067200 Glycine max HOM05D000375 ORTHO05D000240 1.8e-06 55.8 42 66.7
Migut.L01765 Erythranthe guttata HOM05D000375 ORTHO05D000240 2.3e-06 55.5 45 66.7
Gohir.D09G137000 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.3e-06 55.5 49 63.3
Nitab4.5_0027751g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.3e-06 55.5 45 62.2
PSO384G2858 Papaver somniferum HOM05D000375 ORTHO05D000240 2.3e-06 55.5 43 62.8
Potri.006G115200 Populus trichocarpa HOM05D000375 ORTHO05D000240 2.3e-06 55.5 44 59.1
Prupe.7G115500 Prunus persica HOM05D000375 ORTHO05D000240 2.3e-06 55.5 45 62.2
MSTRG.19238 Avicennia marina HOM05D000375 ORTHO05D000240 3.0e-06 55.1 44 61.4
AUR62033547 Chenopodium quinoa HOM05D000375 ORTHO05D000240 3.0e-06 55.1 40 67.5
Glyma.U031220 Glycine max HOM05D000375 ORTHO05D000240 3.0e-06 55.1 52 61.5
Gohir.D04G103100 Gossypium hirsutum HOM05D000375 ORTHO05D000240 3.0e-06 55.1 46 60.9
Gorai.009G406500 Gossypium raimondii HOM05D000375 ORTHO05D000240 3.0e-06 55.1 46 60.9
VMungo0720G3052 Vigna mungo HOM05D000375 ORTHO05D000240 3.0e-06 55.1 45 60.0
ATR0820G058 Amborella trichopoda HOM05D000375 ORTHO05D000240 4.0e-06 54.7 44 59.1
MELO3C009444.2 Cucumis melo HOM05D000375 ORTHO05D000240 4.0e-06 54.7 44 63.6
ECA232G1501 Erigeron canadensis HOM05D000375 ORTHO05D000240 4.0e-06 54.7 65 47.7
Hma1.2p1_0084F.1_g043380 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 4.0e-06 54.7 44 61.4
Oeu032415.1 Olea europaea HOM05D000375 ORTHO05D000240 4.0e-06 54.7 81 46.9
Ah.08g210830 Amaranthus hybridus HOM05D000375 ORTHO05D000240 6.8e-06 53.9 44 59.1
CsaV3_3G036970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 6.8e-06 53.9 44 63.6
Aqoxy4G02853 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 8.8e-06 53.5 41 68.3
Carub.0004s1820 Capsella rubella HOM05D000375 ORTHO05D000240 8.8e-06 53.5 46 63.0
SalBow3G1415 Salvia bowleyana HOM05D000375 ORTHO05D000240 8.8e-06 53.5 42 61.9
Hund04037 Selenicereus undatus HOM05D000375 ORTHO05D000240 8.8e-06 53.5 43 60.5


User provided reference genes

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