Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 0.0e+00 1170.2 582 100.0
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 4.0e-230 801.6 523 80.1
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 4.4e-176 622.1 567 59.6
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.6e-170 603.6 567 57.5
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 1.7e-156 557.0 568 54.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 7.3e-155 551.6 557 53.9
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 6.1e-154 548.5 563 54.5
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 5.7e-152 542.0 568 52.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.8e-150 537.0 573 52.4
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 2.0e-149 533.5 582 51.2
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 2.3e-148 530.0 531 55.4
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.0e-148 529.6 559 53.5
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 8.6e-148 528.1 567 52.6
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.3e-147 525.8 556 51.6
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 9.5e-147 524.6 567 53.1
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.2e-146 524.2 567 51.5
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 3.6e-146 522.7 529 56.0
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.7e-146 522.3 556 51.3
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 6.2e-146 521.9 530 55.5
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 6.2e-146 521.9 552 52.0
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 6.2e-146 521.9 566 53.5
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 6.2e-146 521.9 554 52.7
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 6.8e-145 518.5 535 54.4
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 8.9e-145 518.1 556 50.9
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.2e-142 509.6 576 50.7
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 2.0e-141 506.9 537 53.6
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 4.6e-141 505.8 532 51.9
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.0e-140 504.6 540 52.0
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 2.3e-140 503.4 557 51.7
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 3.0e-140 503.1 537 52.7
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 5.0e-140 502.3 554 51.3
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 6.6e-140 501.9 532 52.4
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.5e-139 500.7 564 50.5
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 3.3e-139 499.6 571 50.8
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.6e-138 497.3 563 50.6
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 3.6e-138 496.1 552 50.4
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 4.7e-138 495.7 554 49.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.7e-138 495.7 556 50.9
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 6.2e-138 495.4 531 53.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 1.4e-137 494.2 541 50.1
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.8e-137 493.8 557 48.7
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.3e-137 493.4 563 50.6
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.3e-137 493.4 564 49.8
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 3.1e-137 493.0 537 52.0
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 1.2e-136 491.1 562 48.8
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 3.4e-136 489.6 574 50.5
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 3.4e-136 489.6 530 51.1
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.4e-136 489.2 521 51.6
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 4.4e-136 489.2 545 50.8
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 5.8e-136 488.8 561 48.8
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.8e-136 488.8 556 50.0
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 5.8e-136 488.8 559 48.5
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 7.5e-136 488.4 511 53.0
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 9.9e-136 488.0 559 47.9
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.9e-136 488.0 522 51.9
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 2.9e-135 486.5 531 50.3
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 4.9e-135 485.7 556 49.8
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 4.9e-135 485.7 563 50.1
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.1e-134 484.6 568 49.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.9e-134 483.8 522 51.5
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.1e-134 482.6 556 49.6
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 5.4e-134 482.3 556 48.2
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 5.4e-134 482.3 559 48.1
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 9.2e-134 481.5 556 47.8
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 6.0e-133 478.8 561 48.5
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 7.8e-133 478.4 556 48.0
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.3e-132 477.6 559 48.1
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.7e-132 477.2 527 49.3
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 3.0e-132 476.5 559 48.1
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 6.6e-132 475.3 558 48.2
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 5.6e-131 472.2 572 47.7
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 9.5e-131 471.5 558 47.7
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 2.8e-130 469.9 532 49.4
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 4.7e-130 469.2 541 49.2
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 6.2e-130 468.8 509 52.5
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 6.2e-130 468.8 560 46.8
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 1.4e-129 467.6 526 51.5
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.8e-129 467.2 576 47.6
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 3.1e-129 466.5 561 47.2
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 5.2e-129 465.7 560 47.7
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 8.9e-129 464.9 565 48.3
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 2.6e-128 463.4 560 49.5
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 9.9e-128 461.5 596 45.6
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 2.2e-127 460.3 561 47.1
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.1e-126 458.0 501 53.1
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 2.4e-126 456.8 523 49.5
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 5.4e-126 455.7 586 46.1
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 7.1e-126 455.3 564 49.1
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 7.8e-125 451.8 560 48.4
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.9e-123 447.2 555 46.3
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 1.9e-123 447.2 566 45.1
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 3.3e-123 446.4 561 45.3
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 9.6e-123 444.9 609 45.0
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.6e-122 444.1 561 45.3
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 6.2e-122 442.2 566 44.9
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 6.2e-122 442.2 561 49.0
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.4e-121 441.0 710 40.7
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.4e-118 431.0 496 49.2
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-118 430.6 570 44.0
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.2e-117 427.9 557 45.1
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 4.8e-114 416.0 482 47.9
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.1e-113 414.8 545 46.1
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 7.9e-109 398.7 708 39.3
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.6e-106 391.0 383 54.0
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 4.5e-104 382.9 375 55.7
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 9.9e-104 381.7 344 58.4
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 6.4e-103 379.0 386 51.8
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 4.6e-101 372.9 388 53.6
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 9.7e-91 338.6 325 55.1
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 2.8e-90 337.0 339 54.9
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.0e-88 330.9 317 56.2
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 4.2e-86 323.2 346 52.6
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 9.1e-81 305.4 350 47.7
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.6e-80 303.9 532 37.0
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.2e-79 300.8 565 36.5
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 3.8e-79 300.1 551 35.0
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 9.1e-73 278.9 365 47.1
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.0e-71 275.4 389 45.2
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 6.5e-71 272.7 384 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 1.1e-70 271.9 532 33.3
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.1e-67 261.9 502 36.3
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.3e-55 221.9 148 70.9
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.4e-52 211.8 131 74.8
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.2e-51 208.8 131 74.0
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 2.0e-51 208.0 168 61.9
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 4.5e-48 196.8 330 40.3
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 3.3e-46 190.7 138 64.5
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 4.0e-44 183.7 148 60.8
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.2e-37 162.2 101 71.3
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.0e-31 141.0 201 41.3
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.3e-30 137.1 84 76.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 7.3e-30 136.3 123 48.0
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.6e-27 127.9 184 39.7
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 4.7e-21 107.1 109 52.3
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.4e-20 105.5 237 35.4
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.8e-20 105.1 118 47.5
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 2.4e-17 94.7 135 41.5
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 7.8e-16 89.7 115 43.5
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 3.0e-15 87.8 147 37.4
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.1e-15 87.0 82 51.2
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.6e-15 86.7 53 71.7
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 5.6e-14 83.6 97 48.5
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.1e-13 81.6 81 55.6
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 4.7e-13 80.5 108 42.6
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 6.2e-13 80.1 174 37.9
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-09 69.3 92 44.6
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.3e-07 62.4 75 42.7
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.6e-06 57.0 62 43.5


User provided reference genes

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