Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.7e-60 235.7 115 100.0
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 4.3e-59 231.1 113 99.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.7e-58 227.6 113 94.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.1e-57 226.5 113 94.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.1e-57 226.5 113 93.8
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.4e-57 226.1 114 93.9
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.8e-57 225.7 113 93.8
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.4e-57 225.3 113 93.8
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.4e-57 225.3 113 93.8
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.4e-57 225.3 113 93.8
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.4e-57 225.3 113 93.8
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.4e-57 225.3 113 92.9
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.4e-57 225.3 113 92.9
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 3.1e-57 224.9 112 94.6
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.1e-57 224.9 113 94.7
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 6.8e-57 223.8 113 92.9
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 6.8e-57 223.8 113 92.0
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 8.9e-57 223.4 112 93.8
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.2e-56 223.0 111 94.6
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.2e-56 223.0 113 92.0
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.2e-56 223.0 113 92.0
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.2e-56 223.0 113 92.0
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.5e-56 222.6 113 92.0
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.5e-56 222.6 113 92.0
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.0e-56 222.2 113 92.0
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.0e-56 222.2 113 92.9
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 2.0e-56 222.2 115 91.3
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.0e-56 222.2 113 92.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.6e-56 221.9 113 91.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 3.4e-56 221.5 113 91.2
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 3.4e-56 221.5 113 92.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.4e-56 221.5 113 91.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 4.4e-56 221.1 113 92.0
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 4.4e-56 221.1 113 91.2
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 4.4e-56 221.1 113 92.0
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 5.8e-56 220.7 112 92.0
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 5.8e-56 220.7 113 91.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 91.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 92.0
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 92.0
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 92.0
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 92.0
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 91.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 7.6e-56 220.3 112 92.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 7.6e-56 220.3 113 91.2
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 7.6e-56 220.3 113 91.2
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 7.6e-56 220.3 113 91.2
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 7.6e-56 220.3 111 92.8
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 7.6e-56 220.3 113 92.0
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 9.9e-56 219.9 111 91.9
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 9.9e-56 219.9 112 92.0
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.3e-55 219.5 112 92.0
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.3e-55 219.5 112 91.1
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.7e-55 219.2 113 90.3
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.7e-55 219.2 113 91.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.7e-55 219.2 113 90.3
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.2e-55 218.8 113 90.3
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.9e-55 218.4 111 91.0
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.9e-55 218.4 111 91.0
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.9e-55 218.4 113 89.4
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 3.8e-55 218.0 113 90.3
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 4.9e-55 217.6 113 90.3
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 4.9e-55 217.6 113 90.3
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 8.4e-55 216.9 113 87.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 8.4e-55 216.9 113 90.3
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 8.4e-55 216.9 113 90.3
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-54 216.5 111 91.0
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.1e-54 216.5 111 90.1
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.9e-54 215.7 112 87.5
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.9e-54 215.7 113 86.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.9e-54 215.7 114 84.2
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.4e-54 215.3 113 85.8
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.4e-54 215.3 113 86.7
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.4e-54 215.3 115 86.1
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.2e-54 214.9 113 86.7
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 4.2e-54 214.5 112 89.3
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 5.4e-54 214.2 126 81.7
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 5.4e-54 214.2 112 89.3
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 5.4e-54 214.2 111 90.1
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 5.4e-54 214.2 113 86.7
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 5.4e-54 214.2 113 86.7
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.4e-54 214.2 118 89.0
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 7.1e-54 213.8 112 86.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 9.3e-54 213.4 113 85.0
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.1e-53 212.2 113 85.0
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.1e-53 212.2 113 85.0
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.1e-53 212.2 113 82.3
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 2.7e-53 211.8 111 86.5
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.7e-53 211.8 112 85.7
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.5e-53 211.5 111 89.2
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 4.6e-53 211.1 113 83.2
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 4.6e-53 211.1 121 84.3
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 4.6e-53 211.1 121 84.3
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 6.0e-53 210.7 111 88.3
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.0e-52 209.9 113 82.3
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.0e-52 209.9 124 82.3
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.3e-52 208.8 111 82.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 2.3e-52 208.8 111 86.5
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.9e-52 208.0 111 83.8
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 5.1e-52 207.6 111 83.8
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 5.1e-52 207.6 113 82.3
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 5.1e-52 207.6 116 87.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 6.6e-52 207.2 111 84.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 6.6e-52 207.2 111 83.8
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.6e-52 207.2 111 82.9
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 6.6e-52 207.2 111 83.8
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 8.7e-52 206.8 133 75.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 8.7e-52 206.8 112 87.5
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.1e-51 206.5 139 74.1
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.5e-51 206.1 124 81.5
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.9e-51 205.7 111 84.7
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 9.6e-51 203.4 106 87.7
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-50 203.0 111 82.0
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 6.2e-50 200.7 106 84.9
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.8e-49 199.1 137 71.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.4e-46 189.5 160 61.9
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.1e-43 179.9 115 78.3
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 5.3e-41 171.0 110 73.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.9e-39 164.5 81 91.4
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 6.4e-39 164.1 81 91.4
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.7e-37 158.7 81 86.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.0e-37 157.5 81 87.7
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.3e-36 156.4 80 87.5
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 5.1e-36 154.5 83 86.7
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.7e-36 153.7 115 60.9
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-35 152.5 106 67.0
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.6e-32 142.1 73 86.3
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.0e-31 140.2 79 77.2
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-31 139.8 70 91.4
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 4.9e-31 137.9 70 87.1
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.4e-27 124.0 112 50.0
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-25 120.2 68 77.9
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 3.1e-25 118.6 68 77.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 3.1e-25 118.6 68 77.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.3e-22 107.1 57 82.5
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.1e-17 93.6 51 76.5
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.4e-17 93.2 49 75.5
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.0e-16 89.4 47 78.7
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 2.3e-12 75.9 40 85.0
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 2.3e-12 75.9 40 85.0
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 2.3e-12 75.9 40 85.0
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 2.3e-12 75.9 40 85.0
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 5.1e-12 74.7 37 89.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 5.7e-11 71.2 52 71.2
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.4e-09 65.9 32 96.9
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 4.1e-09 65.1 32 96.9
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.1e-09 65.1 32 96.9
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 9.1e-09 63.9 32 93.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.0e-08 62.8 32 93.8


User provided reference genes

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