Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 0.0e+00 1139.0 684 100.0
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.9e-273 944.1 679 85.9
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.6e-68 263.5 593 36.9
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.2e-62 244.6 649 36.7
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.4e-53 212.6 717 32.5
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.3e-51 208.0 664 32.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.7e-50 202.6 720 32.8
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 9.1e-48 196.1 722 31.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.5e-45 188.0 701 32.7
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 5.2e-43 180.3 680 31.6
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 8.8e-43 179.5 674 31.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.2e-42 179.1 688 32.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.0e-42 178.3 695 31.9
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.8e-41 174.5 715 31.9
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 4.8e-41 173.7 684 37.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.7e-39 167.9 681 30.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 4.5e-39 167.2 686 32.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.9e-39 166.8 597 33.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.7e-38 165.2 658 30.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.2e-38 164.9 710 30.7
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.2e-38 164.9 518 35.1
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.9e-37 161.8 649 30.2
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.5e-37 161.4 649 30.2
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.2e-37 161.0 703 30.9
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 3.2e-37 161.0 703 30.9
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 4.2e-37 160.6 696 30.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 4.2e-37 160.6 716 31.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 4.2e-37 160.6 701 31.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-36 159.1 715 31.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.1e-36 158.3 675 31.1
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 8.0e-36 156.4 616 33.4
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.0e-36 156.4 645 29.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-35 155.6 650 30.2
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-35 155.6 650 30.2
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.4e-35 155.6 658 29.6
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-35 155.2 649 30.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.3e-35 154.8 705 28.8
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.0e-35 154.1 591 31.3
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 4.0e-35 154.1 690 29.4
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 5.2e-35 153.7 684 31.1
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.2e-35 153.7 638 30.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.6e-34 151.4 706 30.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 4.4e-34 150.6 697 31.1
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 5.7e-34 150.2 644 31.5
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 9.8e-34 149.4 642 31.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.8e-33 147.9 641 29.8
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.8e-33 147.1 703 30.0
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.4e-32 144.8 606 29.5
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.1e-32 144.1 616 29.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 9.1e-32 142.9 656 29.1
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.0e-31 141.7 656 30.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-31 141.7 679 29.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 7.7e-31 139.8 711 29.4
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.0e-30 139.4 655 28.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.3e-30 139.0 707 28.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 2.3e-30 138.3 706 29.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 5.0e-30 137.1 625 29.8
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.5e-29 135.6 648 28.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.9e-29 135.2 663 30.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 5.5e-29 133.7 599 30.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.2e-28 132.5 607 28.5
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.8e-28 131.3 630 31.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.7e-28 130.6 603 31.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.0e-27 129.4 659 28.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.0e-27 129.4 645 29.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.4e-27 129.0 667 28.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.4e-27 129.0 650 28.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-27 128.6 682 26.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 4.0e-27 127.5 627 29.8
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.2e-27 127.1 688 29.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 8.8e-27 126.3 524 31.1
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 8.8e-27 126.3 649 28.4
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 8.8e-27 126.3 634 29.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 8.8e-27 126.3 660 28.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.5e-26 125.6 730 27.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.5e-26 125.6 661 28.1
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.0e-26 125.2 660 28.2
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 7.5e-26 123.2 722 28.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 9.8e-26 122.9 637 28.3
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.7e-25 122.1 643 29.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.7e-25 120.9 679 28.1
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.7e-25 120.9 665 29.0
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 4.9e-25 120.6 620 28.4
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 6.3e-25 120.2 654 27.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 8.3e-25 119.8 696 30.7
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.4e-24 119.0 711 28.6
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.8e-24 118.6 705 26.8
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.8e-24 118.6 641 29.8
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.4e-24 118.2 655 28.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 4.1e-24 117.5 664 28.6
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.4e-24 117.1 596 28.0
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.4e-24 117.1 729 27.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 7.0e-24 116.7 651 27.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.6e-23 115.5 657 31.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.6e-23 115.5 647 35.4
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.7e-23 114.8 686 27.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.5e-23 114.0 685 28.3
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 4.5e-23 114.0 720 27.1
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 5.9e-23 113.6 597 29.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.0e-22 112.8 615 27.8
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.9e-22 111.3 690 27.7
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.8e-22 110.9 594 28.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.9e-21 108.6 197 43.7
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 4.3e-21 107.5 559 27.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.3e-21 107.5 188 41.5
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.0e-19 102.8 251 38.6
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.0e-19 101.3 668 31.6
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-18 99.0 509 28.1
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.5e-18 99.0 695 26.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.5e-18 99.0 658 26.0
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.0e-18 98.6 643 27.1
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 2.0e-18 98.6 563 27.5
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 3.4e-18 97.8 590 25.4
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 7.5e-18 96.7 419 30.8
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.4e-16 92.4 401 29.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.4e-16 91.7 559 26.5
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.4e-16 91.7 568 25.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.1e-16 90.9 612 26.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.6e-15 89.0 556 26.6
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.5e-15 87.8 591 25.2
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.5e-15 87.8 570 26.1
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.8e-15 86.7 269 34.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.0e-14 86.3 285 34.4
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.7e-14 85.5 583 25.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.3e-14 85.1 325 32.9
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.9e-14 84.3 332 32.2
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 8.6e-14 83.2 570 27.9
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.1e-13 82.8 192 38.0
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.5e-13 82.4 641 27.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.9e-13 82.0 559 25.8
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.3e-13 81.3 575 25.9
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.1e-12 78.6 82 61.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 3.6e-12 77.8 313 31.3
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.7e-12 77.4 672 24.7
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-11 76.3 656 26.2
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 5.2e-11 73.9 117 39.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 6.8e-11 73.6 148 35.1
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 6.8e-11 73.6 148 35.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 6.8e-11 73.6 456 28.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.2e-10 72.8 234 35.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.5e-10 72.4 136 37.5
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.0e-10 72.0 146 35.6
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.4e-10 71.2 193 33.2
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.4e-10 71.2 88 48.9
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 5.8e-10 70.5 616 25.3
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.4e-09 67.0 543 26.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-08 66.2 250 32.8
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.2e-08 64.7 659 25.5
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.2e-08 64.7 656 25.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.4e-08 63.9 135 37.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 7.0e-08 63.5 153 35.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.2e-07 62.8 651 25.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-07 62.8 216 35.6
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.6e-07 60.8 255 31.8
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.0e-06 59.7 286 31.1
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 1.3e-06 59.3 547 25.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.0e-06 58.2 235 30.6


User provided reference genes

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