Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.7e-218 762.3 358 100.0
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 8.2e-149 530.8 344 70.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 5.3e-148 528.1 360 67.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 6.9e-148 527.7 359 66.3
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.9e-146 522.3 360 65.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 7.1e-145 517.7 361 66.8
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.1e-144 516.2 351 66.1
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.7e-144 515.8 354 65.3
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.3e-142 508.8 354 63.6
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 4.3e-142 508.4 354 64.1
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 7.4e-142 507.7 359 66.3
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.3e-141 506.9 358 64.2
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.2e-141 506.1 356 63.5
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 8.2e-141 504.2 363 63.6
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.8e-140 503.1 361 63.7
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 5.3e-140 501.5 351 63.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.0e-139 499.6 354 64.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.6e-139 499.2 355 63.7
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.4e-139 498.8 352 64.8
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 7.6e-139 497.7 359 63.5
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.2e-138 496.1 338 64.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.5e-138 494.2 353 62.3
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.5e-138 494.2 352 62.5
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.1e-137 493.8 344 65.1
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.5e-137 492.7 353 64.9
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.5e-137 491.5 345 63.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 5.5e-137 491.5 351 64.1
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 9.3e-137 490.7 353 61.5
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.2e-136 490.3 358 62.0
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.6e-136 488.8 343 62.7
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 4.6e-136 488.4 356 63.5
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.6e-136 488.4 353 63.2
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.1e-136 488.0 339 63.4
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 6.1e-136 488.0 351 63.8
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.9e-136 487.6 339 63.4
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.0e-135 487.3 361 60.7
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.8e-135 486.5 353 63.2
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.8e-135 486.5 353 63.2
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.9e-135 485.3 353 60.9
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 6.7e-135 484.6 340 62.9
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 3.3e-134 482.3 362 61.0
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 3.3e-134 482.3 362 59.9
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 3.3e-134 482.3 361 59.8
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.3e-134 482.3 362 60.2
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.3e-134 481.9 354 60.2
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 5.7e-134 481.5 354 61.0
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 5.7e-134 481.5 362 61.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 7.4e-134 481.1 362 61.0
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 9.7e-134 480.7 319 68.0
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 9.7e-134 480.7 357 60.5
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.3e-133 480.3 353 62.3
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-133 480.3 318 68.2
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-133 479.9 319 68.0
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.7e-133 479.9 350 62.0
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.2e-133 479.6 362 61.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.2e-133 479.6 319 68.0
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.8e-133 479.2 362 61.0
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.8e-133 479.2 362 61.0
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.8e-133 479.2 353 60.3
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.7e-133 478.8 354 62.4
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.1e-132 477.2 359 60.2
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.8e-132 476.5 365 61.4
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.4e-132 476.1 308 68.2
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 4.1e-132 475.3 369 58.8
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 4.1e-132 475.3 361 59.3
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 6.9e-132 474.6 363 58.7
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.5e-131 473.4 355 58.9
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 2.0e-131 473.0 361 59.6
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 5.9e-131 471.5 362 59.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.0e-130 470.7 363 60.3
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.0e-130 470.7 357 59.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.7e-130 469.9 361 59.6
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 2.9e-130 469.2 339 60.8
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 5.0e-130 468.4 362 58.3
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 5.0e-130 468.4 433 51.3
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 6.5e-130 468.0 348 61.5
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 8.5e-130 467.6 337 62.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 8.5e-130 467.6 341 62.2
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.9e-129 466.5 337 62.6
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.9e-129 466.5 361 58.2
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.5e-129 466.1 333 64.0
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.2e-129 465.7 343 59.8
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.2e-129 465.3 348 60.9
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 9.4e-129 464.2 449 49.9
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 9.4e-129 464.2 354 60.5
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.2e-128 463.8 363 59.2
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.7e-128 462.6 340 61.5
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.6e-128 462.2 354 60.7
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.7e-128 461.8 355 60.0
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 6.7e-127 458.0 350 58.6
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.1e-126 457.2 339 61.9
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.6e-126 456.1 361 56.2
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.7e-125 453.4 352 59.9
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.2e-125 453.0 351 59.5
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.8e-125 452.6 343 60.9
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.8e-125 452.6 302 66.9
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.4e-124 450.3 355 57.2
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.4e-124 449.5 358 56.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.4e-124 449.5 341 60.4
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.3e-124 448.4 404 54.2
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 9.1e-124 447.6 340 59.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.6e-123 446.0 355 58.3
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.5e-123 445.3 355 58.0
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.7e-120 436.0 358 55.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.0e-114 417.5 311 62.1
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 3.8e-114 415.6 346 58.4
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 8.5e-114 414.5 354 55.4
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.1e-113 414.1 356 56.2
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 7.2e-113 411.4 275 68.4
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-112 410.2 275 68.0
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 4.7e-112 408.7 334 57.2
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-111 407.1 275 67.6
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.3e-110 402.5 276 63.4
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 9.1e-108 394.4 347 54.5
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 4.1e-100 369.0 271 60.5
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 5.5e-97 358.6 245 63.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.0e-95 354.4 282 55.7
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 7.0e-92 341.7 325 53.2
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 2.7e-91 339.7 357 45.9
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.1e-89 334.3 227 64.8
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.9e-89 333.6 355 45.9
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.6e-89 332.0 344 48.3
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.6e-88 330.5 268 58.6
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.1e-88 330.1 224 64.3
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.8e-86 322.0 246 59.3
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 8.3e-85 318.2 327 48.0
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 2.0e-83 313.5 307 48.5
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.6e-82 308.5 203 66.0
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-78 297.4 295 50.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 3.4e-78 296.2 228 57.9
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 7.3e-73 278.5 213 55.4
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-69 267.7 202 59.9
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.1e-67 260.4 179 62.6
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.7e-67 260.0 204 59.3
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.6e-66 255.4 191 60.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 4.4e-54 216.1 223 47.5
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.4e-46 189.9 153 58.2
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-45 186.8 157 54.8
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.9e-41 174.1 143 58.0
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.2e-35 154.8 214 41.6
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.8e-26 124.4 105 52.4
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.3e-23 112.8 109 51.4
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.5e-22 111.3 96 53.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.7e-21 107.8 102 48.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 4.2e-20 103.2 96 49.0
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 6.9e-15 85.9 116 35.3


User provided reference genes

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