Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 8.2e-126 453.8 232 100.0
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.5e-76 288.9 184 77.7
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 7.8e-76 287.7 189 74.6
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 7.8e-76 287.7 189 75.1
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.3e-75 286.2 189 73.5
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 3.0e-75 285.8 176 79.0
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 3.0e-75 285.8 177 79.1
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 3.0e-75 285.8 184 74.5
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 3.0e-75 285.8 184 74.5
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 3.9e-75 285.4 189 74.6
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 5.0e-75 285.0 182 75.3
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 5.0e-75 285.0 184 74.5
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 1.1e-74 283.9 195 72.8
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.9e-74 283.1 174 78.2
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 2.5e-74 282.7 187 74.3
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 5.6e-74 281.6 175 78.3
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 5.6e-74 281.6 175 78.3
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 5.6e-74 281.6 175 78.3
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 7.3e-74 281.2 191 72.8
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.2e-73 280.4 150 93.3
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 1.6e-73 280.0 191 72.8
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.6e-73 280.0 191 72.8
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.1e-73 279.6 191 72.8
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.8e-73 279.3 191 72.8
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 2.8e-73 279.3 191 71.7
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.1e-73 277.7 191 72.3
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 1.8e-72 276.6 175 76.6
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 3.1e-72 275.8 180 75.6
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 4.0e-72 275.4 170 79.4
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 5.2e-72 275.0 179 74.3
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 5.2e-72 275.0 174 75.9
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 5.2e-72 275.0 190 72.1
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 6.8e-72 274.6 188 72.9
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 6.8e-72 274.6 188 72.9
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 6.8e-72 274.6 188 72.9
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 6.8e-72 274.6 175 76.6
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 6.8e-72 274.6 178 75.3
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.0e-71 273.1 180 73.9
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.0e-71 273.1 180 74.4
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 2.6e-71 272.7 178 74.7
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 2.6e-71 272.7 177 75.1
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 3.4e-71 272.3 181 74.0
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 4.4e-71 271.9 178 74.2
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 4.4e-71 271.9 179 74.9
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 5.8e-71 271.6 180 76.1
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 1.3e-70 270.4 190 72.1
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.3e-70 270.4 178 74.2
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 1.3e-70 270.4 176 75.6
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 1.7e-70 270.0 178 73.6
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 1.7e-70 270.0 178 73.6
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 2.9e-70 269.2 191 72.3
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 4.9e-70 268.5 189 70.9
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 8.3e-70 267.7 178 74.2
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.1e-69 267.3 186 72.6
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.1e-69 267.3 186 72.6
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.4e-69 266.9 179 71.5
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.4e-69 266.9 192 69.8
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.4e-69 266.9 188 70.2
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.4e-69 266.9 183 73.8
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.4e-69 266.2 182 72.0
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 2.4e-69 266.2 182 73.6
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 5.4e-69 265.0 180 72.8
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 7.1e-69 264.6 167 77.2
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 9.2e-69 264.2 195 69.7
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.2e-68 263.8 191 69.1
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 1.2e-68 263.8 177 72.9
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 1.6e-68 263.5 195 69.7
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 2.1e-68 263.1 190 70.5
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 3.5e-68 262.3 174 75.9
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 3.5e-68 262.3 188 73.4
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.7e-67 260.0 190 70.0
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 2.3e-67 259.6 170 71.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 5.6e-66 255.0 199 67.8
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 6.2e-65 251.5 193 66.8
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 6.2e-65 251.5 175 71.4
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.1e-64 250.8 174 71.8
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.5e-63 246.9 187 69.5
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 2.0e-63 246.5 186 72.0
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.0e-63 246.5 170 70.6
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 5.8e-63 245.0 201 66.7
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 5.8e-63 245.0 201 66.7
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 5.8e-63 245.0 201 66.7
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 5.8e-63 245.0 201 66.7
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.2e-62 243.0 170 71.2
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 4.1e-61 238.8 183 69.4
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 4.1e-61 238.8 183 69.4
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 4.1e-61 238.8 190 67.4
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 7.1e-61 238.0 202 64.9
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.1e-60 236.5 204 64.2
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.1e-60 236.5 204 64.2
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 3.5e-60 235.7 190 65.8
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 4.6e-60 235.3 185 63.8
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.0e-59 234.2 183 67.8
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.9e-58 229.9 178 65.7
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 5.6e-58 228.4 151 72.8
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 3.6e-57 225.7 190 64.2
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 3.6e-57 225.7 144 75.7
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 8.4e-54 214.5 151 69.5
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 3.0e-51 206.1 170 60.0
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 1.4e-48 197.2 182 58.8
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.4e-48 196.4 182 50.5
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.9e-45 186.8 143 67.1
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 2.5e-42 176.4 168 51.8
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.6e-41 173.7 172 50.0
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.2e-39 167.5 171 53.2
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.7e-38 163.7 103 73.8
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.7e-38 163.7 103 73.8
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 4.6e-36 155.6 96 77.1
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 3.1e-32 142.9 110 62.7
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.0e-31 140.2 168 48.8
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.5e-23 114.0 131 48.9
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 2.3e-19 100.1 75 64.0
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.4e-13 80.9 61 65.6
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.8e-11 73.9 49 71.4
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 8.2e-09 65.1 49 67.3
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.0e-06 55.8 33 75.8


User provided reference genes

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