Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 7.7e-38 159.8 73 100.0
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.4e-34 149.1 73 94.5
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.0e-18 96.3 65 67.7
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.0e-17 92.0 62 66.1
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 3.4e-17 91.3 63 65.1
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.4e-17 90.9 67 64.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 7.5e-17 90.1 63 68.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 4.9e-16 87.4 63 60.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 6.3e-16 87.0 62 61.3
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 8.3e-16 86.7 63 65.1
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.1e-15 86.3 63 63.5
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.4e-15 85.9 63 58.7
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.4e-15 85.1 62 58.1
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.4e-15 85.1 62 58.1
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.4e-15 85.1 62 58.1
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 3.2e-15 84.7 65 61.5
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 4.1e-15 84.3 63 65.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 5.4e-15 84.0 61 60.7
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 5.4e-15 84.0 65 60.0
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 9.2e-15 83.2 65 61.5
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 9.2e-15 83.2 65 58.5
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.2e-14 82.8 61 59.0
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.2e-14 82.8 66 60.6
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.0e-14 82.0 65 63.1
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.0e-14 82.0 63 57.1
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 2.7e-14 81.6 64 54.7
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 2.7e-14 81.6 64 59.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 3.5e-14 81.3 68 57.4
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 4.6e-14 80.9 66 57.6
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.9e-14 80.5 64 56.2
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 7.8e-14 80.1 65 58.5
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 7.8e-14 80.1 64 54.7
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 1.0e-13 79.7 66 54.5
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.7e-13 79.0 64 56.2
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.7e-13 79.0 64 56.2
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.3e-13 78.6 65 58.5
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.9e-13 78.2 66 56.1
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.9e-13 77.8 63 60.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.9e-13 77.8 67 56.7
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.0e-13 77.4 70 55.7
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 6.6e-13 77.0 65 55.4
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 8.6e-13 76.6 71 53.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 8.6e-13 76.6 66 53.0
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 8.6e-13 76.6 64 57.8
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.1e-12 76.3 63 55.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.1e-12 76.3 66 54.5
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.1e-12 76.3 69 52.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.5e-12 75.9 64 53.1
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 71 54.9
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.9e-12 75.5 75 52.0
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 2.5e-12 75.1 65 52.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.5e-12 75.1 64 54.7
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.3e-12 74.7 73 49.3
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 4.3e-12 74.3 68 57.4
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 5.6e-12 73.9 64 51.6
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 5.6e-12 73.9 65 52.3
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 5.6e-12 73.9 65 52.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.6e-12 73.9 67 50.7
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 5.6e-12 73.9 67 53.7
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 7.3e-12 73.6 67 55.2
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 7.3e-12 73.6 64 56.2
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 7.3e-12 73.6 73 53.4
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 9.5e-12 73.2 68 54.4
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 9.5e-12 73.2 64 51.6
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 9.5e-12 73.2 63 54.0
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 9.5e-12 73.2 66 54.5
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 9.5e-12 73.2 63 55.6
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.6e-11 72.4 67 50.7
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.6e-11 72.4 67 50.7
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.1e-11 72.0 64 56.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.1e-11 72.0 67 50.7
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.1e-11 72.0 64 54.7
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.1e-11 72.0 67 50.7
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.7e-11 70.9 64 50.0
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.7e-11 70.9 65 52.3
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 8.0e-11 70.1 79 44.3
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 8.0e-11 70.1 71 46.5
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 8.0e-11 70.1 76 47.4
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 8.0e-11 70.1 66 48.5
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 8.0e-11 70.1 65 56.9
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 8.0e-11 70.1 76 47.4
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 8.0e-11 70.1 62 50.0
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-10 69.7 73 47.9
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.0e-10 69.7 55 67.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.0e-10 69.7 80 48.8
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.0e-10 69.7 68 54.4
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 1.0e-10 69.7 73 52.1
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.4e-10 69.3 75 46.7
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-10 69.3 68 50.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.8e-10 68.9 75 46.7
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.8e-10 68.9 74 44.6
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-10 68.9 77 45.5
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.8e-10 68.9 62 53.2
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 2.3e-10 68.6 76 46.1
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.3e-10 68.6 64 54.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 3.1e-10 68.2 70 50.0
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.1e-10 68.2 76 44.7
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.1e-10 68.2 76 44.7
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 3.1e-10 68.2 73 43.8
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 3.1e-10 68.2 65 52.3
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 5.2e-10 67.4 76 47.4
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 5.2e-10 67.4 76 47.4
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 5.2e-10 67.4 80 50.0
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.2e-10 67.4 68 52.9
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.8e-10 67.0 77 46.8
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 8.9e-10 66.6 76 46.1
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.2e-09 66.2 70 48.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 44.7
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 44.7
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 46.1
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 44.7
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 44.7
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 46.1
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.0e-09 65.5 76 42.1
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.0e-09 65.5 71 45.1
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 2.6e-09 65.1 81 44.4
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 3.4e-09 64.7 77 44.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 3.4e-09 64.7 77 44.2
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 5.8e-09 63.9 68 44.1
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 7.5e-09 63.5 86 41.9
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 9.8e-09 63.2 70 42.9
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 9.8e-09 63.2 70 42.9
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.3e-08 62.8 70 44.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.3e-08 62.8 64 50.0
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.3e-08 62.8 47 59.6
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-08 62.0 69 42.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 2.9e-08 61.6 67 46.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.9e-08 61.6 67 46.3
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.9e-08 61.6 67 46.3
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.9e-08 61.6 69 42.0
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 3.7e-08 61.2 69 40.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 3.7e-08 61.2 69 40.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 3.7e-08 61.2 69 40.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.9e-08 60.8 67 46.3
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.4e-08 60.5 72 40.3
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 6.4e-08 60.5 69 43.5
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 6.4e-08 60.5 66 48.5
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.4e-07 59.3 69 40.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.2e-06 56.2 81 37.0
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.6e-06 55.8 80 37.5
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 7.8e-06 53.5 89 38.2


User provided reference genes

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