Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.0e-111 404.4 205 100.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.3e-102 375.2 205 93.2
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.3e-71 272.7 208 71.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.5e-67 260.0 213 69.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.0e-67 259.6 189 73.5
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-66 257.3 218 64.7
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.2e-65 252.3 210 66.7
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 7.1e-65 251.1 205 66.8
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.3e-65 250.8 194 67.5
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.3e-65 250.8 194 67.5
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.1e-64 249.6 210 66.7
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.1e-64 249.6 213 66.7
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.5e-64 248.8 155 80.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.5e-64 248.8 213 65.3
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.5e-64 248.8 213 64.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 7.9e-64 247.7 211 65.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.0e-63 247.3 210 63.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.3e-63 246.9 212 64.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.0e-63 245.7 213 62.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 8.7e-63 244.2 210 63.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 8.7e-63 244.2 210 64.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.1e-62 243.8 206 64.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.5e-62 243.4 208 63.9
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.5e-62 243.4 180 68.9
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.5e-62 243.4 151 78.1
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.9e-62 243.0 211 63.0
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.9e-62 243.0 214 63.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.5e-62 242.7 154 79.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.5e-62 242.7 159 76.1
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 185 68.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.3e-62 241.9 204 65.2
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.3e-62 241.9 206 67.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.3e-61 240.4 197 65.5
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.6e-61 240.0 156 77.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.1e-61 239.6 208 62.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.8e-61 239.2 218 62.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.8e-61 239.2 185 68.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.7e-61 238.8 209 59.8
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.7e-61 238.8 212 61.3
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.7e-61 238.8 210 64.3
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.8e-61 238.4 214 59.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-61 238.4 200 65.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 6.3e-61 238.0 202 63.4
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.3e-61 238.0 211 61.1
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.3e-61 238.0 209 62.7
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 8.2e-61 237.7 209 64.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 8.2e-61 237.7 194 66.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.1e-60 237.3 192 66.1
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-60 237.3 211 64.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.4e-60 236.9 211 62.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.4e-60 236.9 195 65.1
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-60 236.9 200 65.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.4e-60 236.9 212 63.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.4e-60 236.9 202 63.9
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-60 236.5 201 63.7
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.8e-60 236.5 221 61.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 3.1e-60 235.7 211 63.0
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.1e-60 235.3 208 61.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.1e-60 235.3 208 60.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.3e-60 235.0 207 60.9
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.3e-60 235.0 208 61.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.3e-60 235.0 208 61.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.3e-60 235.0 208 61.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 5.3e-60 235.0 207 61.4
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 5.3e-60 235.0 200 66.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 5.3e-60 235.0 200 66.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.9e-60 234.6 198 64.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 6.9e-60 234.6 201 64.2
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 6.9e-60 234.6 201 64.2
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 6.9e-60 234.6 213 62.4
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 6.9e-60 234.6 186 66.7
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 9.0e-60 234.2 195 65.6
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.0e-60 234.2 207 61.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.2e-59 233.8 191 64.9
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-59 233.8 207 61.8
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.2e-59 233.8 209 61.2
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.2e-59 233.8 206 60.2
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.5e-59 233.4 190 65.3
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.5e-59 233.4 208 63.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.5e-59 233.4 202 63.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-59 233.4 210 61.4
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.5e-59 233.4 211 63.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.0e-59 233.0 200 65.5
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.4e-59 232.3 214 58.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-59 232.3 208 61.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 4.5e-59 231.9 204 62.7
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 5.9e-59 231.5 206 61.7
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 5.9e-59 231.5 211 61.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.6e-59 231.1 155 75.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-58 230.3 198 62.6
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.2e-58 229.6 159 73.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 6.5e-58 228.0 211 62.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 6.5e-58 228.0 159 71.1
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-57 227.3 209 57.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.2e-56 223.8 184 65.2
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.2e-56 223.8 162 68.5
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.1e-56 223.0 255 51.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-55 219.9 227 57.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.0e-55 219.2 212 58.5
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.5e-54 216.9 121 85.1
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 9.7e-54 214.2 189 62.4
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.7e-54 214.2 217 57.1
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-53 213.8 199 61.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.7e-53 212.2 199 57.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.3e-53 211.5 191 60.7
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.4e-52 209.5 163 65.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.0e-50 204.1 216 56.9
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.3e-50 203.8 148 69.6
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.2e-50 203.0 227 53.7
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 6.5e-50 201.4 187 58.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.9e-49 199.9 211 54.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.5e-49 199.5 205 55.1
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 7.2e-49 198.0 150 67.3
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.6e-48 195.3 156 62.8
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.4e-47 193.7 154 63.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.3e-47 193.0 176 61.9
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.0e-47 192.6 211 53.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.7e-46 188.3 201 53.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.7e-46 188.3 201 53.2
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 3.7e-45 185.7 118 72.0
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.4e-44 183.0 270 43.0
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.4e-44 183.0 146 63.7
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.2e-43 180.6 127 67.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.5e-43 180.3 121 70.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.0e-42 177.6 102 84.3
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-42 177.2 162 57.4
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.0e-39 167.5 162 58.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 7.7e-35 151.4 112 60.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.3e-34 150.6 93 73.1
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.3e-34 150.6 175 49.1
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.0e-34 148.7 174 47.1
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 8.5e-34 147.9 115 60.0
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 3.6e-32 142.5 81 85.2
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 6.1e-32 141.7 219 42.9
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.3e-31 139.8 133 49.6
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 4.0e-31 139.0 106 56.6
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.7e-29 133.7 147 49.7
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.5e-26 121.7 80 73.8
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.2e-25 119.4 67 82.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.2e-25 119.4 67 82.1
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.0e-23 112.5 119 54.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.7e-16 89.0 153 41.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.2e-14 84.3 61 65.6
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.2e-13 80.1 50 72.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.8e-12 77.0 126 36.5
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.6e-06 56.6 38 68.4


User provided reference genes

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