Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.6e-46 187.2 90 100.0
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.2e-43 179.5 89 96.6
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 4.7e-37 157.5 82 87.8
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 3.1e-36 154.8 89 79.8
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.4e-35 151.4 89 78.7
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 7.5e-35 150.2 89 79.8
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 7.5e-35 150.2 89 79.8
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 9.8e-35 149.8 88 80.7
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 9.8e-35 149.8 89 77.5
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.3e-34 149.4 88 78.4
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.2e-34 148.7 88 79.5
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 3.7e-34 147.9 89 78.7
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.4e-34 147.1 89 78.7
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.4e-34 147.1 89 78.7
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 8.3e-34 146.7 89 78.7
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 8.3e-34 146.7 89 78.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 8.3e-34 146.7 89 78.7
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 8.3e-34 146.7 88 78.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 8.3e-34 146.7 88 78.4
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.3e-34 146.7 88 77.3
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 8.3e-34 146.7 89 76.4
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.4e-33 146.0 86 79.1
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.4e-33 146.0 90 76.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.9e-33 145.6 88 77.3
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.9e-33 145.6 88 75.0
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.4e-33 145.2 86 76.7
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.4e-33 145.2 84 78.6
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 3.2e-33 144.8 80 82.5
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.2e-33 144.8 86 76.7
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 3.2e-33 144.8 88 77.3
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 5.4e-33 144.1 88 76.1
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 5.4e-33 144.1 89 76.4
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 5.4e-33 144.1 87 78.2
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.4e-33 144.1 84 77.4
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.4e-33 144.1 88 76.1
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 5.4e-33 144.1 88 76.1
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.4e-33 144.1 88 76.1
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 5.4e-33 144.1 89 77.5
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 5.4e-33 144.1 79 82.3
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 7.0e-33 143.7 86 75.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 7.0e-33 143.7 80 81.2
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 7.0e-33 143.7 81 82.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 9.2e-33 143.3 89 74.2
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 9.2e-33 143.3 89 75.3
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 9.2e-33 143.3 82 80.5
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 9.2e-33 143.3 82 79.3
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 9.2e-33 143.3 88 78.4
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.6e-32 142.5 86 75.6
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.6e-32 142.5 79 81.0
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 2.1e-32 142.1 89 74.2
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 2.1e-32 142.1 88 76.1
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.1e-32 142.1 89 76.4
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.7e-32 141.7 86 76.7
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.7e-32 141.7 89 71.9
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.5e-32 141.4 86 75.6
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.5e-32 141.4 86 76.7
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 4.6e-32 141.0 86 75.6
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 4.6e-32 141.0 79 82.3
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 6.0e-32 140.6 89 77.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 6.0e-32 140.6 89 77.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 6.0e-32 140.6 89 77.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 6.0e-32 140.6 86 75.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 6.0e-32 140.6 91 73.6
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.8e-32 140.2 86 74.4
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 7.8e-32 140.2 86 74.4
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 7.8e-32 140.2 86 74.4
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 7.8e-32 140.2 89 75.3
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.3e-31 139.4 89 73.0
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.3e-31 139.4 83 75.9
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.3e-31 138.7 84 76.2
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.3e-31 138.7 84 76.2
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.3e-31 138.7 84 76.2
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.3e-31 138.7 84 76.2
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.3e-31 138.7 86 75.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.3e-31 138.7 108 64.8
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 3.9e-31 137.9 78 80.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 5.1e-31 137.5 82 78.0
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 5.1e-31 137.5 89 71.9
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 5.1e-31 137.5 82 75.6
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 5.1e-31 137.5 86 74.4
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-30 136.3 84 75.0
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-30 136.3 84 75.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.1e-30 136.3 83 74.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.5e-30 136.0 88 69.3
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 2.5e-30 135.2 79 78.5
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 3.3e-30 134.8 78 78.2
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.3e-30 134.4 79 75.9
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 4.3e-30 134.4 85 77.6
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 5.6e-30 134.0 86 76.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.3e-30 133.7 88 71.6
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 9.5e-30 133.3 78 78.2
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 9.5e-30 133.3 78 78.2
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 9.5e-30 133.3 78 75.6
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 9.5e-30 133.3 86 76.7
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.2e-29 132.9 86 75.6
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.6e-29 132.5 88 73.9
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 2.1e-29 132.1 85 76.5
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.6e-29 131.3 78 78.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 3.6e-29 131.3 85 75.3
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 4.7e-29 131.0 85 71.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 4.7e-29 131.0 106 63.2
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 8.1e-29 130.2 83 72.3
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.4e-28 129.4 91 69.2
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.4e-28 129.4 85 75.3
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.8e-28 129.0 81 69.1
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 2.3e-28 128.6 76 76.3
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 2.2e-26 122.1 74 73.0
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 7.1e-25 117.1 68 79.4
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.5e-24 114.8 77 64.9
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 4.6e-24 114.4 72 72.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.9e-23 111.3 65 76.9
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 6.6e-23 110.5 66 75.8
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 8.6e-23 110.2 66 74.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.5e-22 109.4 84 59.5
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.5e-22 108.6 66 74.2
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 2.4e-20 102.1 63 71.4
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.8e-20 100.5 63 69.8
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.9e-20 100.1 77 64.9
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-19 99.0 64 68.8
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 5.8e-19 97.4 63 69.8
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 7.6e-19 97.1 66 63.6
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 7.6e-19 97.1 62 71.0
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.9e-18 95.1 91 54.9
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.9e-17 92.4 52 76.9
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 2.4e-17 92.0 73 58.9
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.2e-17 91.7 53 79.2
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.7e-16 88.6 67 67.2
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.3e-15 85.5 74 52.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 8.7e-15 83.6 80 51.2
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.3e-14 81.6 80 52.5
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.2e-13 79.7 55 69.1
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 8.1e-13 77.0 48 75.0
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 8.1e-13 77.0 52 71.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.1e-12 76.6 54 64.8
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 4.9e-10 67.8 32 90.6
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 7.1e-09 63.9 51 54.9


User provided reference genes

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