Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 1.3e-224 782.7 380 100.0
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 6.1e-179 630.9 345 84.9
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 4.0e-178 628.2 375 78.7
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.5e-177 626.3 374 79.4
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 3.4e-177 625.2 375 78.7
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 7.5e-177 624.0 375 79.2
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.1e-175 620.2 376 78.5
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.1e-175 620.2 376 78.5
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 9.2e-175 617.1 351 82.3
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 3.5e-174 615.1 366 79.5
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 4.6e-174 614.8 344 82.8
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 6.0e-174 614.4 347 82.4
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 3.0e-173 612.1 375 75.2
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 8.6e-173 610.5 379 76.0
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.9e-172 609.4 376 76.6
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 2.5e-172 609.0 375 76.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 3.3e-172 608.6 376 76.3
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 4.3e-172 608.2 374 76.7
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 5.6e-172 607.8 376 76.9
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 9.5e-172 607.1 362 79.3
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.6e-171 606.3 374 76.5
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.6e-171 606.3 344 82.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 1.6e-171 606.3 374 76.7
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.6e-171 606.3 358 79.6
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.6e-171 606.3 375 76.3
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 2.1e-171 605.9 387 75.2
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.8e-171 605.5 376 76.6
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 3.6e-171 605.1 344 81.7
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 8.0e-171 604.0 345 81.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.4e-170 603.2 376 76.1
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 2.3e-170 602.4 344 81.1
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 3.1e-170 602.1 344 80.8
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 4.0e-170 601.7 346 80.9
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 6.8e-170 600.9 347 79.8
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 6.8e-170 600.9 378 74.6
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 6.8e-170 600.9 374 75.7
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 8.9e-170 600.5 345 79.7
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.2e-169 600.1 343 81.3
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.5e-169 599.7 378 74.9
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.5e-169 599.7 379 74.1
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 3.4e-169 598.6 381 74.0
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 7.5e-169 597.4 373 76.1
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 7.5e-169 597.4 344 80.5
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 9.8e-169 597.0 344 81.1
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 9.8e-169 597.0 393 73.5
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.3e-168 596.7 352 79.8
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.3e-168 596.7 393 74.6
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.7e-168 596.3 342 81.9
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.9e-168 595.5 379 73.6
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 4.9e-168 594.7 344 81.1
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 4.9e-168 594.7 343 79.9
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 4.9e-168 594.7 345 81.2
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 6.4e-168 594.3 358 79.1
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 6.4e-168 594.3 374 74.9
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.1e-167 593.6 380 73.7
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.4e-167 593.2 377 73.5
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.9e-167 592.8 375 73.9
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.9e-167 592.8 361 77.0
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 2.4e-167 592.4 344 80.8
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 3.2e-167 592.0 377 73.5
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 3.2e-167 592.0 344 79.4
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 4.1e-167 591.7 357 75.9
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.1e-167 591.7 341 81.8
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 9.2e-167 590.5 374 75.4
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 1.6e-166 589.7 376 74.2
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.0e-166 589.3 342 80.7
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.0e-166 589.3 345 79.7
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 2.7e-166 589.0 372 75.8
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.0e-166 587.8 344 79.4
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 7.8e-166 587.4 375 73.6
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.3e-165 586.6 342 80.1
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.7e-165 586.3 388 73.5
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.7e-165 586.3 343 78.1
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.9e-165 585.1 349 77.4
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 5.0e-165 584.7 344 78.8
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 6.6e-165 584.3 341 80.4
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.1e-164 583.6 341 80.1
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.5e-164 583.2 341 79.8
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 4.3e-164 581.6 343 79.6
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 5.6e-164 581.3 349 75.9
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 5.6e-164 581.3 383 73.1
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 5.6e-164 581.3 341 80.9
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.6e-163 579.7 347 76.4
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.6e-163 579.7 351 76.1
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.1e-163 579.3 354 77.4
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 4.7e-163 578.2 337 80.4
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 6.2e-163 577.8 446 64.8
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.4e-162 576.6 341 78.9
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.8e-162 576.2 341 79.5
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.1e-162 575.5 404 68.8
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 6.8e-162 574.3 358 76.0
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.0e-161 572.8 341 77.1
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.3e-160 570.1 341 78.3
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.7e-160 569.7 341 77.4
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.7e-160 569.7 370 73.0
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 2.9e-160 568.9 344 78.5
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 6.4e-160 567.8 393 71.2
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 6.0e-158 561.2 478 59.8
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.5e-156 556.6 344 77.0
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 8.9e-154 547.4 346 72.8
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 1.0e-149 533.9 386 66.3
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.7e-149 533.1 355 71.5
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 6.9e-146 521.2 351 72.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 5.8e-145 518.1 304 80.3
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 3.2e-143 512.3 351 71.5
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 2.7e-142 509.2 339 70.8
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.3e-139 500.4 340 69.4
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 4.8e-139 498.4 341 69.5
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 4.6e-134 481.9 376 65.4
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 7.4e-132 474.6 270 82.2
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.2e-128 463.0 352 61.6
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.1e-124 450.7 259 80.7
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.3e-124 449.1 254 81.9
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 2.9e-120 436.0 339 61.4
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.2e-119 432.6 391 58.1
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.6e-118 430.3 312 68.9
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.7e-118 429.5 312 68.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 2.3e-109 399.8 232 77.2
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.7e-109 398.3 389 55.8
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 2.5e-108 396.4 355 54.9
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 9.7e-108 394.4 228 82.0
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.5e-105 387.1 357 57.4
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.4e-101 374.0 245 71.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 4.5e-97 359.0 339 53.7
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 5.9e-97 358.6 350 53.1
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 2.0e-92 343.6 254 68.5
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.6e-89 333.2 220 74.1
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 5.2e-85 318.9 190 78.4
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.1e-79 301.2 174 79.3
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 2.0e-73 280.4 219 63.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 1.0e-61 241.5 162 71.6
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 6.4e-59 232.3 169 70.4
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 1.1e-53 214.9 115 83.5
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.2e-51 207.2 114 78.9
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.4e-50 203.8 346 36.7
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.9e-40 169.9 94 83.0
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.5e-39 167.9 248 42.3
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.1e-37 161.8 99 74.7
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.9e-35 152.9 357 32.8
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 3.0e-24 117.1 81 74.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.9e-23 114.4 95 57.9
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.1e-22 109.0 169 41.4
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.8e-21 107.8 255 31.4
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.3e-19 101.7 87 60.9
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 6.9e-13 79.3 45 82.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 5.5e-10 69.7 41 70.7


User provided reference genes

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