Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 6.1e-36 153.7 81 100.0
CDE02G2904 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 4.5e-31 137.5 81 92.6
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 8.9e-19 96.7 81 66.7
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 3.4e-18 94.7 84 69.0
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.7e-17 92.4 81 66.7
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 4.9e-17 90.9 82 68.3
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 4.9e-17 90.9 82 68.3
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 4.9e-17 90.9 81 66.7
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 4.9e-17 90.9 83 66.3
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.1e-16 89.7 81 65.4
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.4e-16 89.4 81 56.8
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.4e-16 89.4 81 59.3
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.9e-16 89.0 81 67.9
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.9e-16 89.0 81 65.4
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 2.4e-16 88.6 79 65.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.2e-16 88.2 81 66.7
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.1e-16 87.8 82 63.4
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 5.4e-16 87.4 81 66.7
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 5.4e-16 87.4 81 66.7
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 5.4e-16 87.4 80 60.0
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 7.0e-16 87.0 81 64.2
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.2e-15 86.3 81 60.5
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.2e-15 86.3 81 64.2
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.7e-15 85.1 81 63.0
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.7e-15 85.1 82 67.1
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.5e-15 84.7 81 65.4
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 3.5e-15 84.7 81 65.4
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.5e-15 84.7 82 63.4
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 3.5e-15 84.7 81 66.7
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.6e-15 84.3 81 65.4
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 6.0e-15 84.0 85 61.2
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 6.0e-15 84.0 81 63.0
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.8e-15 83.6 81 63.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.8e-15 83.6 81 63.0
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 7.8e-15 83.6 81 63.0
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.0e-14 83.2 82 61.0
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.3e-14 82.8 79 60.8
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 64.2
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 64.2
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 61.7
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 64.2
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 64.2
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 63.0
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 2.3e-14 82.0 83 67.5
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 3.0e-14 81.6 82 61.0
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.0e-14 81.6 82 61.0
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.0e-14 81.6 81 64.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.9e-14 81.3 81 61.7
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 3.9e-14 81.3 80 63.8
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.9e-14 81.3 81 63.0
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.9e-14 81.3 81 63.0
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 5.0e-14 80.9 82 63.4
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 6.6e-14 80.5 82 62.2
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 6.6e-14 80.5 81 63.0
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 1.1e-13 79.7 83 45.8
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-13 79.7 83 65.1
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 1.1e-13 79.7 83 65.1
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.1e-13 79.7 82 64.6
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.5e-13 79.3 82 50.0
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.5e-13 79.3 82 50.0
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 1.5e-13 79.3 81 61.7
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 1.9e-13 79.0 82 50.0
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 1.9e-13 79.0 83 65.1
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 1.9e-13 79.0 82 50.0
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 1.9e-13 79.0 82 61.0
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 2.5e-13 78.6 83 65.1
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 2.5e-13 78.6 82 50.0
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 2.5e-13 78.6 83 65.1
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.5e-13 78.6 83 63.9
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 2.5e-13 78.6 81 64.2
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 3.3e-13 78.2 82 61.0
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 4.3e-13 77.8 81 64.2
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 4.3e-13 77.8 81 63.0
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 5.6e-13 77.4 82 48.8
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 5.6e-13 77.4 82 48.8
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 5.6e-13 77.4 82 48.8
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 5.6e-13 77.4 82 48.8
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 5.6e-13 77.4 80 53.8
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 5.6e-13 77.4 78 62.8
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 5.6e-13 77.4 78 62.8
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 7.3e-13 77.0 83 61.4
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 9.5e-13 76.6 81 60.5
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.2e-12 76.3 82 47.6
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.6e-12 75.9 83 61.4
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.6e-12 75.9 82 61.0
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 2.1e-12 75.5 82 48.8
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.1e-12 75.5 82 47.6
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.1e-12 75.5 82 58.5
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 2.8e-12 75.1 81 59.3
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.8e-12 75.1 85 58.8
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 2.8e-12 75.1 78 61.5
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.6e-12 74.7 79 59.5
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 3.6e-12 74.7 82 59.8
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.6e-12 74.7 83 62.7
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.6e-12 74.7 81 60.5
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 4.7e-12 74.3 81 59.3
CDE04G3517 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 6.2e-12 73.9 78 60.3
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 6.2e-12 73.9 84 48.8
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 1.1e-11 73.2 82 58.5
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 1.1e-11 73.2 83 61.4
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 1.1e-11 73.2 80 55.0
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.1e-11 73.2 81 55.6
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 1.4e-11 72.8 79 59.5
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.4e-11 72.8 80 61.2
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 1.4e-11 72.8 82 58.5
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 2.3e-11 72.0 83 54.2
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.3e-11 72.0 83 60.2
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 2.3e-11 72.0 83 60.2
unitig_21.g21031 Utricularia gibba HOM05D002160 ORTHO05D002012 2.3e-11 72.0 81 55.6
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 3.1e-11 71.6 81 56.8
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 4.0e-11 71.2 83 60.2
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.2e-11 70.9 83 57.8
Sed0021463 Sechium edule HOM05D002160 ORTHO05D002012 5.2e-11 70.9 81 56.8
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 6.8e-11 70.5 81 55.6
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 6.8e-11 70.5 84 44.0
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 6.8e-11 70.5 82 53.7
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 1.2e-10 69.7 80 46.2
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.2e-10 69.7 75 48.0
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 1.5e-10 69.3 57 54.4
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 1.5e-10 69.3 78 57.7
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.0e-10 68.9 81 58.0
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 2.6e-10 68.6 57 52.6
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.4e-10 68.2 81 45.7
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 3.4e-10 68.2 82 61.0
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 3.4e-10 68.2 83 57.8
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 4.4e-10 67.8 80 58.8
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 4.4e-10 67.8 82 48.8
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 5.8e-10 67.4 81 58.0
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 5.8e-10 67.4 80 56.2
Eucgr.K03136 Eucalyptus grandis HOM05D002160 ORTHO05D002012 5.8e-10 67.4 79 58.2
Hund10660 Selenicereus undatus HOM05D002160 ORTHO05D002012 5.8e-10 67.4 59 50.8
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 9.9e-10 66.6 81 46.9
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.3e-09 66.2 79 53.2
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 1.7e-09 65.9 84 45.2
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 2.2e-09 65.5 82 46.3
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.2e-09 65.5 84 57.1
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.9e-09 65.1 69 68.1
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.7e-09 64.7 82 53.7
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 3.7e-09 64.7 57 50.9
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 6.4e-09 63.9 103 52.4
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 6.4e-09 63.9 82 59.8
Zm00001eb124380 Zea mays HOM05D002160 ORTHO05D002012 6.4e-09 63.9 61 49.2
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 8.3e-09 63.5 80 43.8
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.3e-09 63.5 79 51.9
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 8.3e-09 63.5 80 52.5
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 8.3e-09 63.5 58 53.4
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 8.3e-09 63.5 56 44.6
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 43.8
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 83 55.4
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 1.1e-08 63.2 59 49.2
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 2.4e-08 62.0 57 50.9
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 3.2e-08 61.6 79 53.2
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 4.1e-08 61.2 75 52.0
SEGI_32259 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 4.1e-08 61.2 82 57.3
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 9.2e-08 60.1 78 39.7
SEGI_27294 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.2e-07 59.7 82 52.4
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 1.6e-07 59.3 47 55.3
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 2.1e-07 58.9 47 53.2
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.7e-07 58.5 95 48.4
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 2.7e-07 58.5 49 55.1
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 2.7e-07 58.5 75 50.7
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.7e-07 58.5 84 39.3
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 2.7e-07 58.5 58 44.8
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 3.5e-07 58.2 81 45.7
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 3.5e-07 58.2 81 45.7
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 6.0e-07 57.4 59 45.8
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 7.8e-07 57.0 85 54.1
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 7.8e-07 57.0 85 55.3
SHI12670 Sapria himalayana HOM05D002160 ORTHO05D002012 7.8e-07 57.0 81 53.1
SEGI_29180 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.3e-06 56.2 83 51.8
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.7e-06 55.8 53 49.1
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 1.7e-06 55.8 75 48.0
Eucgr.J02054 Eucalyptus grandis HOM05D002160 ORTHO05D002012 2.3e-06 55.5 84 53.6
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 2.3e-06 55.5 46 76.1
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 3.0e-06 55.1 80 42.5
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 3.0e-06 55.1 80 48.8
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 3.0e-06 55.1 46 47.8
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.1e-06 54.3 80 51.2
MBI13_g34921_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 6.6e-06 53.9 53 60.4
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 8.6e-06 53.5 70 41.4
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 8.6e-06 53.5 70 41.4
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 8.6e-06 53.5 70 41.4
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 8.6e-06 53.5 70 41.4


User provided reference genes

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