Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1894.8 957 100.0
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1794.2 974 93.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1550.4 876 86.4
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1536.2 875 85.9
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1532.7 937 81.2
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 874 85.8
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1528.5 937 80.4
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 876 85.3
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 877 84.4
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 933 80.6
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 875 85.5
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1523.1 876 84.4
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1523.1 892 83.7
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1522.7 875 84.7
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1520.0 874 84.7
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1518.4 888 84.1
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 875 84.9
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 947 80.1
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1514.2 875 84.7
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 875 84.8
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 873 84.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 876 84.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 876 84.2
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 876 84.5
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 876 83.9
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 884 82.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 873 84.2
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 903 82.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 874 83.5
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 875 84.1
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 876 83.7
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 876 83.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 875 83.9
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 878 82.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 892 82.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 878 83.4
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 876 83.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 875 83.5
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 877 82.7
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 897 81.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 941 78.2
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 875 83.3
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 879 82.9
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1490.3 881 82.5
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 887 81.6
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1489.2 910 80.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 876 82.5
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 874 82.8
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 878 82.1
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 874 82.7
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1482.2 875 81.9
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 874 82.3
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 876 81.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 883 81.3
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1474.9 879 82.1
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 844 85.1
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 874 81.4
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 874 81.8
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 879 81.0
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1469.5 874 80.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1467.6 875 80.8
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1466.8 954 75.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1465.7 862 83.5
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 874 81.1
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 876 80.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1460.3 873 80.8
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 875 80.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 885 79.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 885 79.9
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1459.1 858 82.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1458.4 871 80.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 874 82.2
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 858 81.9
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 873 80.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1454.5 843 84.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1454.1 885 79.7
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1453.7 857 82.4
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1452.6 874 80.5
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1452.2 911 77.9
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 876 80.5
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1448.3 943 75.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 885 79.3
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1447.6 853 82.9
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 948 77.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 876 80.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 925 76.8
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 876 80.3
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 876 80.3
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 876 80.3
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 911 77.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1442.9 925 76.6
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1442.9 852 82.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 925 76.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 880 80.9
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1440.6 834 84.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 857 81.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 874 79.7
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 873 80.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1438.3 873 80.2
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 883 79.6
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1434.5 877 79.8
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1433.7 873 80.0
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 914 76.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 903 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1419.8 875 78.6
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 844 80.3
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1413.3 878 78.7
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1410.6 855 80.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1409.0 926 76.6
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1404.4 905 75.5
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1404.4 901 75.6
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1387.5 912 74.0
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1384.4 860 78.3
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1384.4 973 72.5
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1375.5 879 77.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 898 75.6
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1356.7 882 76.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1340.1 772 84.1
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1334.3 823 79.0
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1330.1 903 73.5
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1327.4 872 76.3
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1324.3 803 79.2
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 877 74.3
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1295.4 803 79.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1283.5 886 75.2
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1260.4 880 73.1
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1236.9 713 84.3
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1236.1 875 71.0
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1228.8 730 81.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1191.4 779 75.6
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1189.5 857 67.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1185.2 886 65.8
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1174.5 885 67.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 5.9e-311 1070.8 631 82.1
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.9e-306 1055.8 883 60.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.1e-293 1013.4 581 83.5
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.4e-264 916.0 551 79.9
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 5.0e-262 908.3 910 54.1
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 9.0e-211 738.0 456 78.9
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.8e-209 732.6 432 82.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.5e-208 728.8 505 73.7
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.9e-187 658.7 451 73.4
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.4e-184 651.0 406 79.6
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 6.1e-183 645.6 745 48.5
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 2.2e-156 557.4 467 62.1
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.2e-154 551.6 335 80.6
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 9.2e-131 472.2 296 77.4
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.7e-130 470.7 391 61.1
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.8e-109 399.8 423 52.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-101 373.2 318 61.3
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.8e-89 335.1 226 74.8
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-85 320.5 266 63.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-63 248.8 227 60.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-60 238.4 216 58.3
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 8.8e-57 226.5 151 72.8
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 5.2e-49 200.7 119 80.7
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 6.1e-42 177.2 268 42.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.2e-35 154.5 119 62.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 7.5e-32 143.7 83 84.3
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-31 142.1 85 77.6
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 3.8e-28 131.3 81 79.0
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.1e-26 124.0 90 63.3
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.2e-23 115.5 453 26.0
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 4.1e-22 111.3 130 52.3
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.0e-20 106.7 95 57.9
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 8.0e-18 97.1 56 76.8
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 4.9e-15 87.8 60 66.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.5e-11 75.5 57 71.9
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-11 75.1 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-11 74.7 49 73.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 3.6e-10 71.6 42 76.2
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.1e-09 68.6 36 83.3
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.4e-08 64.7 43 67.4
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.7e-07 62.8 46 63.0


User provided reference genes

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