Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.0e-157 560.1 293 100.0
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 9.8e-100 367.5 294 68.0
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.8e-99 365.2 293 66.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.3e-96 357.1 295 66.8
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.7e-96 356.7 296 66.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 2.9e-96 355.9 296 66.6
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.8e-96 355.5 296 65.9
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.8e-96 355.5 296 65.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.0e-96 355.1 295 65.8
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 5.0e-96 355.1 295 65.8
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 6.6e-96 354.8 295 65.8
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.5e-95 352.8 295 65.4
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.5e-95 351.7 295 65.4
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.6e-94 350.1 295 65.1
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.1e-94 349.7 296 65.2
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 3.6e-94 349.0 295 66.1
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 4.7e-94 348.6 296 65.9
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 4.7e-94 348.6 295 64.1
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.1e-94 348.2 297 65.3
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 8.0e-94 347.8 295 62.7
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 8.0e-94 347.8 295 63.1
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 8.0e-94 347.8 295 64.7
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 8.0e-94 347.8 295 64.4
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.8e-93 346.7 296 65.5
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.8e-93 346.7 295 65.4
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 6.8e-93 344.7 295 64.4
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.8e-93 344.7 294 63.3
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 8.9e-93 344.4 295 62.0
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.0e-92 343.2 296 63.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 4.4e-92 342.0 295 64.1
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 9.8e-92 340.9 295 64.7
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.8e-91 339.3 295 64.1
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 4.9e-91 338.6 296 61.8
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.9e-91 338.6 294 62.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.4e-90 337.0 295 62.0
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.4e-90 336.3 321 60.1
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 2.4e-90 336.3 298 61.7
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.1e-90 335.9 296 63.2
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.1e-90 335.9 293 62.1
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 5.4e-90 335.1 296 63.5
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 5.4e-90 335.1 296 62.8
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 7.0e-90 334.7 296 62.2
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 7.0e-90 334.7 292 62.7
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 9.2e-90 334.3 295 61.7
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.6e-89 333.6 295 62.4
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.0e-89 333.2 295 62.7
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 2.7e-89 332.8 295 61.4
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 3.5e-89 332.4 295 63.1
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 5.9e-89 331.6 296 62.2
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 7.8e-89 331.3 296 63.5
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.0e-88 330.9 295 59.3
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.3e-88 330.5 321 60.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.7e-88 330.1 296 62.2
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 1.7e-88 330.1 318 58.8
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.7e-88 330.1 297 61.6
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.3e-88 329.7 295 63.1
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.9e-88 329.3 296 62.5
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.9e-88 329.3 299 61.5
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.9e-88 328.9 296 61.8
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.6e-88 328.2 295 62.7
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 6.6e-88 328.2 328 57.6
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-87 327.4 295 62.4
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.1e-87 327.4 293 61.4
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.9e-87 326.6 307 61.2
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.9e-87 326.6 307 61.2
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.9e-87 326.6 298 62.4
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.5e-87 326.2 298 62.8
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 4.3e-87 325.5 285 63.2
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 7.3e-87 324.7 323 56.7
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-86 323.9 307 61.2
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 3.6e-86 322.4 294 62.2
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 4.7e-86 322.0 294 59.9
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 4.7e-86 322.0 271 65.3
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 4.7e-86 322.0 295 61.0
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.8e-85 320.1 294 59.9
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 5.2e-85 318.5 296 60.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 5.2e-85 318.5 297 60.6
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 5.2e-85 318.5 297 60.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.2e-84 317.4 293 59.7
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.5e-84 317.0 295 60.7
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.5e-84 317.0 298 59.1
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.0e-84 316.6 230 72.2
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.0e-84 316.6 300 59.0
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.6e-84 316.2 294 60.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 2.2e-83 313.2 306 59.8
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.7e-83 312.4 294 60.2
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 3.7e-83 312.4 297 59.6
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 2.4e-82 309.7 291 60.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.2e-82 309.3 295 57.3
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 4.1e-82 308.9 287 63.1
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 5.4e-82 308.5 294 58.5
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.8e-81 304.7 295 59.7
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.7e-80 303.5 295 58.0
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.3e-80 303.1 352 51.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.9e-79 300.1 295 59.0
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.3e-79 299.3 293 56.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 3.3e-79 299.3 295 59.0
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.6e-78 297.0 309 55.3
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 8.0e-78 294.7 297 56.9
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.3e-77 293.1 295 56.6
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.0e-77 292.4 294 56.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 5.2e-77 292.0 294 56.8
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 5.2e-77 292.0 297 55.9
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.0e-76 290.0 294 55.4
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.6e-76 289.7 295 57.6
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.8e-76 288.5 229 65.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.7e-75 287.0 293 56.0
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 3.7e-75 285.8 298 55.7
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.1e-74 284.3 238 63.0
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.1e-73 280.0 289 56.4
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.0e-72 277.7 268 56.7
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.3e-72 276.6 288 55.6
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 6.6e-72 275.0 214 66.8
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 8.6e-72 274.6 288 55.6
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.1e-71 274.2 257 60.7
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 5.6e-71 271.9 339 49.9
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.3e-67 260.8 196 67.9
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.9e-66 256.9 311 49.5
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.7e-65 253.1 206 67.5
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 3.5e-65 252.7 196 64.8
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 4.6e-65 252.3 304 49.7
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 6.6e-64 248.4 218 63.8
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 7.3e-63 245.0 294 51.7
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 4.7e-62 242.3 295 50.8
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 6.2e-62 241.9 243 54.7
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.8e-61 240.4 207 63.3
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.4e-61 240.0 294 51.7
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.1e-61 239.6 294 53.4
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.2e-60 237.7 312 49.4
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-60 237.3 294 45.9
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.8e-59 232.6 268 54.1
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.4e-58 229.9 208 61.5
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 1.9e-55 220.3 207 56.5
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 3.3e-55 219.5 215 55.8
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 5.6e-55 218.8 289 48.4
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.6e-54 217.2 369 40.4
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.6e-54 216.1 275 46.5
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 4.9e-51 205.7 178 60.7
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.1e-50 204.5 327 42.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.2e-49 201.1 175 63.4
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 5.1e-48 195.7 289 45.7
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-46 191.0 318 39.0
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.1e-38 163.7 147 58.5
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.1e-37 161.4 333 36.9
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.3e-30 137.9 336 32.7
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.0e-27 128.3 309 30.7
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 4.2e-26 122.9 81 71.6
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 7.4e-23 112.1 92 67.4
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.8e-21 107.5 109 56.9
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.2e-14 84.0 101 53.5
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.5e-12 76.3 141 40.4
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 7.7e-12 75.5 66 53.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.1e-10 71.6 328 24.7
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.5e-10 70.5 146 35.6
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 2.7e-09 67.0 57 66.7
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.8e-08 64.3 73 57.5


User provided reference genes

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