Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.1e-55 218.8 110 100.0
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.7e-50 201.8 110 90.0
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 7.8e-50 200.3 110 87.3
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 2.3e-49 198.7 110 87.3
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 2.9e-49 198.4 110 87.3
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 3.8e-49 198.0 110 87.3
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 6.6e-49 197.2 110 86.4
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 8.6e-49 196.8 110 87.3
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 8.6e-49 196.8 110 85.5
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.1e-48 196.4 110 85.5
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 1.1e-48 196.4 110 86.4
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 1.1e-48 196.4 110 86.4
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 86.4
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 88.2
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.5e-48 196.1 110 87.3
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 1.9e-48 195.7 110 86.4
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 1.9e-48 195.7 110 86.4
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.9e-48 195.7 110 85.5
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.5e-48 195.3 110 86.4
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 3.3e-48 194.9 110 85.5
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 4.3e-48 194.5 110 85.5
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 4.3e-48 194.5 110 87.3
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 4.3e-48 194.5 110 84.5
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 4.3e-48 194.5 110 84.5
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 4.3e-48 194.5 110 84.5
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 5.6e-48 194.1 110 86.4
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 5.6e-48 194.1 110 85.5
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 7.3e-48 193.7 110 83.6
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 9.5e-48 193.4 110 85.5
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 9.5e-48 193.4 110 84.5
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 9.5e-48 193.4 110 83.6
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 9.5e-48 193.4 110 84.5
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 9.5e-48 193.4 110 84.5
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 9.5e-48 193.4 110 82.7
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.2e-47 193.0 110 84.5
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.2e-47 193.0 110 84.5
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.6e-47 192.6 110 85.5
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 1.6e-47 192.6 110 84.5
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 1.6e-47 192.6 110 85.5
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 1.6e-47 192.6 110 84.5
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.6e-47 192.6 110 83.6
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 2.1e-47 192.2 110 85.5
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 2.1e-47 192.2 110 82.7
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 2.1e-47 192.2 110 84.5
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 2.8e-47 191.8 110 83.6
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.8e-47 191.8 110 82.7
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 3.6e-47 191.4 110 83.6
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 3.6e-47 191.4 111 86.5
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 3.6e-47 191.4 111 86.5
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 3.6e-47 191.4 110 84.5
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 3.6e-47 191.4 110 84.5
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 4.7e-47 191.0 110 84.5
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 4.7e-47 191.0 110 84.5
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 6.1e-47 190.7 110 85.5
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 6.1e-47 190.7 110 81.8
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 6.1e-47 190.7 110 82.7
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 6.1e-47 190.7 110 81.8
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 8.0e-47 190.3 110 82.7
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 8.0e-47 190.3 110 81.8
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 8.0e-47 190.3 110 82.7
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 8.0e-47 190.3 108 83.3
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 8.0e-47 190.3 110 87.3
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.0e-46 189.9 112 83.9
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.0e-46 189.9 112 83.9
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.0e-46 189.9 110 83.6
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 1.4e-46 189.5 110 82.7
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.4e-46 189.5 110 84.5
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.4e-46 189.5 109 82.6
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.4e-46 189.5 110 82.7
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.4e-46 189.5 110 84.5
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.8e-46 189.1 110 82.7
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 2.3e-46 188.7 110 83.6
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 2.3e-46 188.7 110 82.7
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 2.3e-46 188.7 110 82.7
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 2.3e-46 188.7 110 82.7
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.0e-46 188.3 112 83.0
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 3.0e-46 188.3 110 80.9
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 5.2e-46 187.6 110 83.6
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 5.2e-46 187.6 110 80.9
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 6.8e-46 187.2 110 80.0
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 6.8e-46 187.2 110 82.7
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 8.9e-46 186.8 110 81.8
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 8.9e-46 186.8 110 80.9
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 1.2e-45 186.4 110 80.9
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.2e-45 186.4 110 80.9
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 1.2e-45 186.4 110 81.8
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 83.6
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 81.8
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.5e-45 186.0 112 83.9
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 80.9
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 80.9
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 84.5
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 81.8
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.5e-45 186.0 110 80.9
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 2.6e-45 185.3 110 81.8
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.4e-45 184.9 110 81.8
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 3.4e-45 184.9 112 83.0
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 3.4e-45 184.9 110 81.8
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 3.4e-45 184.9 110 82.7
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.4e-45 184.5 112 83.0
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 4.4e-45 184.5 110 82.7
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 4.4e-45 184.5 110 80.0
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 5.8e-45 184.1 110 80.0
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 9.8e-45 183.3 110 80.9
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 9.8e-45 183.3 112 82.1
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 1.3e-44 183.0 112 82.1
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.3e-44 183.0 112 82.1
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.7e-44 182.6 110 81.8
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 2.2e-44 182.2 110 82.7
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 2.2e-44 182.2 108 82.4
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 6.4e-44 180.6 111 80.2
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.1e-43 179.9 110 80.9
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 1.4e-43 179.5 110 81.8
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 2.4e-43 178.7 110 80.0
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 3.2e-43 178.3 130 70.0
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 4.1e-43 177.9 110 80.9
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 5.4e-43 177.6 111 79.3
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 4.6e-42 174.5 110 77.3
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 6.0e-42 174.1 103 79.6
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 1.3e-41 172.9 110 77.3
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 8.6e-41 170.2 110 79.1
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 7.3e-40 167.2 132 67.4
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.1e-38 161.8 133 64.7
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 4.0e-38 161.4 115 71.3
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.9e-35 152.5 128 61.7
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 5.4e-35 151.0 128 61.7
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 7.0e-35 150.6 111 66.7
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 9.2e-35 150.2 108 64.8
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 1.0e-33 146.7 111 64.9
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 2.3e-33 145.6 111 71.2
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 7.3e-32 140.6 82 80.5
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 7.3e-32 140.6 82 81.7
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 1.6e-31 139.4 110 64.5
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 8.9e-30 133.7 79 81.0
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.5e-29 132.9 83 74.7
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.2e-28 129.0 76 78.9
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 7.1e-27 124.0 116 56.0
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 4.9e-20 101.3 66 74.2
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 1.1e-14 83.6 112 46.4
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.4e-11 72.4 38 89.5
Cc00_g09330 Coffea canephora HOM05D003693 ORTHO05D004698 3.6e-07 58.5 34 85.3
Cc00_g09380 Coffea canephora HOM05D003693 ORTHO05D004698 3.6e-07 58.5 34 85.3
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.3e-06 54.7 28 92.9


User provided reference genes

Program Settings